NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM102265 Query DataSets for GSM102265
Status Public on Mar 28, 2007
Title 0942-2
Sample type RNA
 
Source name biopsy
Organism Homo sapiens
Characteristics sample no.: 942
age: 56
Sex: F
primary site: Tongue
pathological diagnosis: squamous cell carcinoma
t stage: T2
n status: N0
metastasis-free survival (m): 47
analytical group: Reference
Extracted molecule total RNA
Extraction protocol ISOGEN(Wako pure chemical)+RNeasy(QIAGEN)
Label biotin
Label protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270813678-B500%29?OpenDocument&hometitle=WebDocs
 
Hybridization protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270810969-B500%29?OpenDocument&hometitle=WebDocs
Scan protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3AScanning+CodeLi%28248345081-B500%29?OpenDocument&hometitle=WebDocs
Description Biopsy sample
Data processing CodeLink Expression Analysis version 4.1
 
Submission date Mar 29, 2006
Last update date Dec 23, 2014
Contact name Hiroshi Watanabe
E-mail(s) hiro.orad@tmd.ac.jp
Phone +81-43-206-4048
Organization name National institute of radiological sceiences
Street address Anagawa 4-9-1
City Inage-ku
State/province Chiba-shi
ZIP/Postal code 263+8555
Country Japan
 
Platform ID GPL2891
Series (1)
GSE4676 Gene expression profiles of oral tongue squamous cell carcinoma tissues.

Data table header descriptions
ID_REF CodeLink Feature_id
Array Logical array
Raw_intensity Raw signal intensity value
VALUE same as UNF_VALUE but with flagged values removed
Quality_flag CodeLink quality flag
Signal_strength Signal strength
Spot_mean Spot median
Spot_median Spot median
Spot_stdev Spot standard deviation
Spot_area Spot area
Spot_diameter Spot diameter
Spot_noise_level Spot noise level
Bkgd_mean Background mean
Bkgd_median Background median
Bkgd_stdev Background standard deviation
Bkgd_area Background area
UNF_VALUE Median normalized signal intensity value

Data table
ID_REF Array Raw_intensity VALUE Quality_flag Signal_strength Spot_mean Spot_median Spot_stdev Spot_area Spot_diameter Spot_noise_level Bkgd_mean Bkgd_median Bkgd_stdev Bkgd_area UNF_VALUE
109 1 652.9113 2.4461 G 5.7762 767.9113 603.0000 549.9767 126 12.6660251617432 132.943322540536 115.4076 115.0000 11.9622 219 2.4461
110 1 385.9697 1.4460 G 3.9065 497.9697 413.0000 304.7959 134 13.0619335174561 127.472150693559 111.6118 112.0000 10.3148 265 1.4460
111 1 141.5313 0.5302 G 1.9758 253.5313 224.0000 116.1545 130 12.8655023574829 128.320186026699 112.4280 112.0000 10.8801 267 0.5302
112 1 950.4821 3.5609 G 8.1837 1063.4821 689.0000 902.1634 141 13.3987598419189 129.951045565067 113.1971 113.0000 11.3007 284 3.5609
113 1 5395.8550 20.2150 G 42.6537 5507.8550 4736.0000 4494.5322 147 13.6808700561523 129.129519708502 113.7875 112.0000 11.4197 283 20.2150
114 1 174.0504 0.6521 G 2.2031 287.0504 213.0000 150.4009 121 12.4121704101563 130.291005179925 113.8913 113.0000 11.5273 238 0.6521
116 1 194.1912 0.7275 G 2.3407 309.1912 236.0000 168.7731 138 13.2554540634155 132.09536228595 116.4648 115.0000 11.3969 294 0.7275
117 1 112.1151 0.4200 G 1.7186 226.1151 215.0000 63.9701 115 12.1005182266235 131.570066994387 115.2347 114.0000 11.7134 221 0.4200
118 1 20.8781 0.0782 G 1.0316 130.8781 128.0000 20.3196 125 12.6156625747681 126.863670204856 110.8307 110.0000 11.2424 264 0.0782
119 1 34.3645 0.1287 G 1.1344 145.3645 146.0000 25.5736 109 11.7806243896484 128.14096491146 111.6952 111.0000 11.4273 218 0.1287
120 1 50.7600 0.1902 G 1.2720 160.7600 157.0000 38.6507 127 12.7161874771118 126.384026956376 110.5714 110.0000 10.9227 276 0.1902
121 1 35.2713 0.1321 G 1.1636 145.2713 134.0000 52.7126 131 12.9148902893066 124.848834372849 110.0733 110.0000 9.8992 283 0.1321
123 1 26.2115 0.0982 G 1.0755 137.2115 131.0000 43.6057 106 11.617374420166 127.585134902209 111.3716 111.0000 11.0568 226 0.0982
124 1 324.9655 1.2174 G 3.4299 435.9655 350.0000 269.4083 118 12.2573356628418 127.108602852988 111.0655 111.0000 10.7391 237 1.2174
125 1 181.9279 0.6816 G 2.2787 293.9279 248.0000 152.3661 113 11.9948348999023 128.990049181246 112.0276 112.0000 11.3267 225 0.6816
126 1 41.0693 0.1539 G 1.1951 152.0693 143.0000 33.9846 103 11.4517974853516 127.242280053556 111.9052 111.0000 10.8282 240 0.1539
127 1 31.1313 0.1166 G 1.0986 143.1313 141.0000 25.2369 101 11.3400707244873 130.289731410582 113.2915 112.0000 12.1931 231 0.1166
128 1 463.1810 1.7353 G 4.5081 573.1810 456.0000 362.8210 118 12.2573356628418 127.1453733245 110.7118 110.0000 11.4302 237 1.7353
130 1 211.2222 0.7913 G 2.5274 323.2222 289.0000 135.1178 146 13.6342573165894 127.885654085497 111.7636 112.0000 10.5904 268 0.7913
131 1 465.3882 1.7435 G 4.3867 581.3882 540.0000 358.7413 154 14.0028171539307 132.533942722081 116.2603 116.0000 11.0226 252 1.7435

Total number of rows: 20469

Table truncated, full table size 2677 Kbytes.




Supplementary data files not provided
| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap