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Sample GSM102266 Query DataSets for GSM102266
Status Public on Mar 28, 2007
Title 0983-1
Sample type RNA
 
Source name biopsy
Organism Homo sapiens
Characteristics sample no.: 983
age: 47
Sex: M
primary site: Tongue
pathological diagnosis: squamous cell carcinoma
t stage: T1
n status: N0
metastasis-free survival (m): 45
analytical group: Reference
Extracted molecule total RNA
Extraction protocol ISOGEN(Wako pure chemical)+RNeasy(QIAGEN)
Label biotin
Label protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270813678-B500%29?OpenDocument&hometitle=WebDocs
 
Hybridization protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270810969-B500%29?OpenDocument&hometitle=WebDocs
Scan protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3AScanning+CodeLi%28248345081-B500%29?OpenDocument&hometitle=WebDocs
Description Biopsy sample
Data processing CodeLink Expression Analysis version 4.1
 
Submission date Mar 29, 2006
Last update date Dec 23, 2014
Contact name Hiroshi Watanabe
E-mail(s) hiro.orad@tmd.ac.jp
Phone +81-43-206-4048
Organization name National institute of radiological sceiences
Street address Anagawa 4-9-1
City Inage-ku
State/province Chiba-shi
ZIP/Postal code 263+8555
Country Japan
 
Platform ID GPL2891
Series (1)
GSE4676 Gene expression profiles of oral tongue squamous cell carcinoma tissues.

Data table header descriptions
ID_REF CodeLink Feature_id
Array Logical array
Raw_intensity Raw signal intensity value
VALUE same as UNF_VALUE but with flagged values removed
Quality_flag CodeLink quality flag
Signal_strength Signal strength
Spot_mean Spot median
Spot_median Spot median
Spot_stdev Spot standard deviation
Spot_area Spot area
Spot_diameter Spot diameter
Spot_noise_level Spot noise level
Bkgd_mean Background mean
Bkgd_median Background median
Bkgd_stdev Background standard deviation
Bkgd_area Background area
UNF_VALUE Median normalized signal intensity value

Data table
ID_REF Array Raw_intensity VALUE Quality_flag Signal_strength Spot_mean Spot_median Spot_stdev Spot_area Spot_diameter Spot_noise_level Bkgd_mean Bkgd_median Bkgd_stdev Bkgd_area UNF_VALUE
109 1 151.0840 0.3882 G 1.9657 268.0840 247.0000 112.1527 121 12.4121704101563 136.383162332724 117.9604 117.0000 12.9221 235 0.3882
110 1 574.7647 1.4769 G 5.1029 689.7647 562.0000 458.9897 138 13.2554540634155 135.171751044035 116.1767 115.0000 13.4478 259 1.4769
111 1 386.4962 0.9931 G 3.7624 500.4962 378.0000 342.7773 135 13.1105813980103 133.027288917594 116.3200 114.0000 12.6849 260 0.9931
112 1 848.4254 2.1801 G 6.9215 964.4254 753.0000 787.3172 136 13.1590490341187 139.336696810465 118.9527 116.0000 15.5578 285 2.1801
113 1 1881.8777 4.8355 G 14.2714 1998.8777 1540.0000 1547.6005 141 13.3987598419189 140.062177919163 119.2448 117.0000 15.3748 251 4.8355
114 1 237.8295 0.6111 G 2.6287 352.8295 295.0000 203.0436 131 12.9148902893066 134.22075751936 116.6502 115.0000 12.8138 315 0.6111
116 1 311.2910 0.7999 G 3.1360 424.2910 324.0000 263.1881 136 13.1590490341187 135.298960795357 115.2425 113.0000 14.8660 278 0.7999
117 1 158.4211 0.4071 G 2.0357 272.4211 252.0000 93.1326 135 13.1105813980103 133.823634599591 115.6176 114.0000 13.2158 246 0.4071
118 1 27.2314 0.0700 G 1.0363 142.2314 141.0000 24.6629 123 12.5143299102783 137.255085246375 116.5802 115.0000 14.8367 253 0.0700
119 1 5.3448 L 0.8491 124.3448 122.0000 16.5181 118 12.2573356628418 146.446542898175 122.4066 119.0000 18.2977 249 0.0137
120 1 186.0250 0.4780 G 2.1473 306.0250 280.0000 124.2209 122 12.4633550643921 142.514613400414 122.8018 120.0000 15.0097 225 0.4780
121 1 12.1087 L 0.9155 129.1087 126.0000 18.0045 92 10.8230323791504 141.028847544898 118.8661 117.0000 16.0192 232 0.0311
123 1 21.0331 L 0.9834 139.0331 136.0000 24.2146 123 12.5143299102783 141.374784097137 120.5324 118.0000 15.5832 305 0.0540
124 1 295.9820 0.7605 G 2.9073 415.9820 338.0000 236.9576 113 11.9948348999023 143.082423689249 121.4046 120.0000 15.3883 223 0.7605
125 1 233.3063 0.5995 G 2.4933 348.3063 299.0000 188.6871 113 11.9948348999023 139.698822138912 119.2601 115.0000 16.4659 231 0.5995
126 1 34.0600 0.0875 G 1.0641 153.0600 148.0000 32.1888 102 11.396071434021 143.839600893267 121.6581 119.0000 16.5597 242 0.0875
127 1 30.8100 0.0792 G 1.0375 150.8100 151.0000 24.5001 102 11.396071434021 145.356274701707 123.3644 120.0000 16.9042 233 0.0792
128 1 550.0769 1.4134 G 4.6037 671.0769 603.0000 439.3679 119 12.3091630935669 145.76816884101 123.3779 121.0000 16.5121 225 1.4134
130 1 368.2681 0.9463 G 3.3811 486.2681 421.0000 218.5941 140 13.3511619567871 143.818077379956 121.1577 118.0000 17.2121 289 0.9463
131 1 260.9868 0.6706 G 2.6072 378.9868 351.0000 200.0492 154 14.0028171539307 145.359948995548 121.3064 118.0000 18.2400 258 0.6706

Total number of rows: 20469

Table truncated, full table size 2690 Kbytes.




Supplementary data files not provided
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