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Sample GSM102267 Query DataSets for GSM102267
Status Public on Mar 28, 2007
Title 0983-2
Sample type RNA
 
Source name biopsy
Organism Homo sapiens
Characteristics sample no.: 983
age: 47
Sex: M
primary site: Tongue
pathological diagnosis: squamous cell carcinoma
t stage: T1
n status: N0
metastasis-free survival (m): 45
analytical group: Reference
Extracted molecule total RNA
Extraction protocol ISOGEN(Wako pure chemical)+RNeasy(QIAGEN)
Label biotin
Label protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270813678-B500%29?OpenDocument&hometitle=WebDocs
 
Hybridization protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270810969-B500%29?OpenDocument&hometitle=WebDocs
Scan protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3AScanning+CodeLi%28248345081-B500%29?OpenDocument&hometitle=WebDocs
Description Biopsy sample
Data processing CodeLink Expression Analysis version 4.1
 
Submission date Mar 29, 2006
Last update date Dec 23, 2014
Contact name Hiroshi Watanabe
E-mail(s) hiro.orad@tmd.ac.jp
Phone +81-43-206-4048
Organization name National institute of radiological sceiences
Street address Anagawa 4-9-1
City Inage-ku
State/province Chiba-shi
ZIP/Postal code 263+8555
Country Japan
 
Platform ID GPL2891
Series (1)
GSE4676 Gene expression profiles of oral tongue squamous cell carcinoma tissues.

Data table header descriptions
ID_REF CodeLink Feature_id
Array Logical array
Raw_intensity Raw signal intensity value
VALUE same as UNF_VALUE but with flagged values removed
Quality_flag CodeLink quality flag
Signal_strength Signal strength
Spot_mean Spot median
Spot_median Spot median
Spot_stdev Spot standard deviation
Spot_area Spot area
Spot_diameter Spot diameter
Spot_noise_level Spot noise level
Bkgd_mean Background mean
Bkgd_median Background median
Bkgd_stdev Background standard deviation
Bkgd_area Background area
UNF_VALUE Median normalized signal intensity value

Data table
ID_REF Array Raw_intensity VALUE Quality_flag Signal_strength Spot_mean Spot_median Spot_stdev Spot_area Spot_diameter Spot_noise_level Bkgd_mean Bkgd_median Bkgd_stdev Bkgd_area UNF_VALUE
109 1 162.3731 0.4724 G 2.0470 275.3731 239.0000 117.6495 136 13.1590490341187 134.527299173221 114.9752 113.0000 14.3515 252 0.4724
110 1 334.4338 0.9730 G 3.1358 451.4338 376.0000 298.7248 138 13.2554540634155 143.96344852787 120.7362 117.0000 17.9756 264 0.9730
111 1 796.8298 2.3182 G 5.9822 914.8298 700.0000 717.4315 143 13.4934520721436 152.926449339679 121.8870 118.0000 23.2843 247 2.3182
112 1 893.0870 2.5982 G 6.6303 1011.0870 727.0000 782.3190 140 13.3511619567871 152.494268851667 121.7362 118.0000 22.9962 264 2.5982
113 1 1329.3680 3.8675 G 10.4069 1440.3680 1058.0000 1151.9684 146 13.6342573165894 138.404879640608 115.2646 111.0000 18.2699 267 3.8675
114 1 248.9037 0.7241 G 2.6171 359.9037 288.0000 200.6410 137 13.2073392868042 137.522490784586 114.9834 111.0000 17.6817 313 0.7241
116 1 233.7652 0.6801 G 2.4973 346.7652 308.0000 187.7597 117 12.2052869796753 138.854562889014 116.3040 113.0000 17.2364 235 0.6801
117 1 157.9818 0.4596 G 1.8043 269.9818 264.0000 93.5385 112 11.9416427612305 149.630872233135 119.0185 112.0000 25.0872 224 0.4596
118 1 47.5798 0.1384 G 1.1176 162.5798 158.0000 37.8148 121 12.4121704101563 145.472778090249 118.8168 115.0000 20.3152 272 0.1384
119 1 7.4940 L 0.8419 123.4940 120.0000 20.9683 83 10.2800235748291 146.688992383998 117.6267 116.0000 20.4593 225 0.0218
120 1 210.8376 0.6134 G 2.3258 324.8376 282.0000 146.2530 119 12.3091630935669 139.665274320375 117.0727 114.0000 17.1102 228 0.6134
121 1 14.9808 L 0.8935 133.9808 133.0000 19.1185 52 8.1368579864502 149.954108589933 122.2938 119.0000 20.6361 219 0.0436
123 1 36.0826 0.1050 G 1.0727 147.0826 144.0000 33.5415 123 12.5143299102783 137.117239026369 115.2406 111.0000 17.4115 276 0.1050
124 1 303.2018 0.8821 G 2.9391 416.2018 367.0000 233.4356 111 11.8882122039795 141.609382213346 117.8318 113.0000 19.0729 228 0.8821
125 1 329.9573 0.9599 G 3.2914 439.9573 389.0000 251.5769 119 12.3091630935669 133.668243296739 114.3056 110.0000 15.7788 224 0.9599
126 1 38.8586 0.1130 G 1.0997 151.8586 150.0000 28.1116 101 11.3400707244873 138.090950303254 115.1558 113.0000 16.7273 239 0.1130
127 1 33.2222 0.0967 G 1.0737 145.2222 146.0000 22.1043 128 12.7661533355713 135.253804488178 115.0036 112.0000 15.5025 287 0.0967
128 1 419.3104 1.2199 G 3.8163 530.3104 448.0000 335.8153 118 12.2573356628418 138.961053370751 115.4783 111.0000 18.6407 238 1.2199
130 1 347.4602 1.0109 G 3.0433 461.4602 454.0000 210.5350 115 12.1005182266235 151.631169878713 120.4279 114.0000 25.0875 237 1.0109
131 1 289.0719 0.8410 G 2.9580 402.0719 323.0000 233.8462 141 13.3987598419189 135.926562130872 113.7770 113.0000 15.2844 288 0.8410

Total number of rows: 20469

Table truncated, full table size 2685 Kbytes.




Supplementary data files not provided
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