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Sample GSM102269 Query DataSets for GSM102269
Status Public on Mar 28, 2007
Title 0985-2
Sample type RNA
 
Source name biopsy
Organism Homo sapiens
Characteristics sample no.: 985
age: 80
Sex: M
primary site: Tongue
pathological diagnosis: squamous cell carcinoma
t stage: T2
n status: N0
lymphatic .metastasis: +
metastasis-free survival (m): 7
analytical group: Reference
Extracted molecule total RNA
Extraction protocol ISOGEN(Wako pure chemical)+RNeasy(QIAGEN)
Label biotin
Label protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270813678-B500%29?OpenDocument&hometitle=WebDocs
 
Hybridization protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270810969-B500%29?OpenDocument&hometitle=WebDocs
Scan protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3AScanning+CodeLi%28248345081-B500%29?OpenDocument&hometitle=WebDocs
Description Biopsy sample
Data processing CodeLink Expression Analysis version 4.1
 
Submission date Mar 29, 2006
Last update date Dec 23, 2014
Contact name Hiroshi Watanabe
E-mail(s) hiro.orad@tmd.ac.jp
Phone +81-43-206-4048
Organization name National institute of radiological sceiences
Street address Anagawa 4-9-1
City Inage-ku
State/province Chiba-shi
ZIP/Postal code 263+8555
Country Japan
 
Platform ID GPL2891
Series (1)
GSE4676 Gene expression profiles of oral tongue squamous cell carcinoma tissues.

Data table header descriptions
ID_REF CodeLink Feature_id
Array Logical array
Raw_intensity Raw signal intensity value
VALUE same as UNF_VALUE but with flagged values removed
Quality_flag CodeLink quality flag
Signal_strength Signal strength
Spot_mean Spot median
Spot_median Spot median
Spot_stdev Spot standard deviation
Spot_area Spot area
Spot_diameter Spot diameter
Spot_noise_level Spot noise level
Bkgd_mean Background mean
Bkgd_median Background median
Bkgd_stdev Background standard deviation
Bkgd_area Background area
UNF_VALUE Median normalized signal intensity value

Data table
ID_REF Array Raw_intensity VALUE Quality_flag Signal_strength Spot_mean Spot_median Spot_stdev Spot_area Spot_diameter Spot_noise_level Bkgd_mean Bkgd_median Bkgd_stdev Bkgd_area UNF_VALUE
109 1 146.3173 0.7739 G 1.8539 274.3173 276.0000 89.9005 106 11.617374420166 147.968761142393 128.6360 128.0000 13.3125 236 0.7739
110 1 425.7568 2.2519 G 3.6809 556.7568 463.0000 330.2120 113 11.9948348999023 151.257281355622 131.3856 131.0000 13.5049 244 2.2519
111 1 166.1963 0.8791 G 1.9717 299.1963 261.0000 136.6001 109 11.7806243896484 151.744246652466 134.3438 133.0000 12.4962 232 0.8791
112 1 1077.7544 5.7005 G 7.8205 1213.7544 964.0000 826.7687 116 12.1530151367188 155.202092297239 135.4783 136.0000 12.8014 238 5.7005
113 1 2799.5950 14.8078 G 18.5519 2935.5950 2737.0000 1878.5421 123 12.5143299102783 158.23707845565 135.8478 136.0000 14.8247 238 14.8078
114 1 191.0971 1.0108 G 2.0220 329.0971 306.0000 132.8696 105 11.562445640564 162.755582082766 137.7261 138.0000 16.5037 238 1.0108
116 1 150.1515 0.7942 G 1.7557 281.1515 245.0000 135.5390 101 11.3400707244873 160.138686422313 134.2585 131.0000 19.4258 244 0.7942
117 1 78.7596 0.4166 G 1.3581 206.7596 204.0000 53.8824 106 11.617374420166 152.236292833606 130.1532 128.0000 16.1575 243 0.4166
118 1 2.2988 L 0.8554 131.2988 129.0000 17.9899 87 10.5248203277588 153.491730975495 130.9380 129.0000 16.3278 234 0.0122
119 1 1.3800 L 0.8711 127.3800 128.0000 13.5483 50 7.97884559631348 146.22717044619 126.7598 126.0000 13.4848 212 0.0073
120 1 38.4639 0.2034 G 1.1325 164.4639 163.0000 32.3053 97 11.1132459640503 145.221563459099 126.9407 126.0000 12.8144 244 0.2034
121 1 8.7241 L 0.9344 139.7241 139.0000 13.8777 87 10.5248203277588 149.534524834487 132.3610 131.0000 12.3564 213 0.0461
123 1 24.2813 0.1284 G 1.0302 161.2813 159.0000 24.9089 96 11.0558128356934 156.556599323934 137.1154 137.0000 13.0377 242 0.1284
124 1 121.8889 0.6447 G 1.6418 259.8889 231.0000 99.8329 101 11.3400707244873 158.295491949032 139.1894 138.0000 13.5303 235 0.6447
125 1 101.6436 0.5376 G 1.4940 242.6436 220.0000 88.8906 103 11.4517974853516 162.410257249087 141.2434 141.0000 14.2735 234 0.5376
126 1 32.8132 0.1736 G 1.0555 180.8132 182.0000 32.4738 91 10.7640514373779 171.313240763529 148.0851 148.0000 15.5422 243 0.1736
127 1 17.1667 L 0.9502 175.1667 171.0000 24.2057 90 10.7047443389893 184.35415259142 159.0855 158.0000 17.5694 242 0.0908
128 1 379.0648 2.0050 G 2.8929 545.0648 438.0000 335.4123 110 11.8345403671265 188.413870266366 166.1803 166.0000 14.9426 241 2.0050
130 1 248.6729 1.3153 G 2.2241 402.6729 375.0000 155.7558 109 11.7806243896484 181.047005926659 154.1652 154.0000 18.0313 238 1.3153
131 1 163.0092 0.8622 G 1.8072 312.0092 284.0000 122.2818 111 11.8882122039795 172.648885826404 149.5551 149.0000 15.7659 235 0.8622

Total number of rows: 20469

Table truncated, full table size 2664 Kbytes.




Supplementary data files not provided
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