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Sample GSM102272 Query DataSets for GSM102272
Status Public on Mar 28, 2007
Title 0990-1
Sample type RNA
 
Source name biopsy
Organism Homo sapiens
Characteristics squamous cell cartinoma of oral tongue, male
Extracted molecule total RNA
Extraction protocol ISOGEN(Wako pure chemical)+RNeasy(QIAGEN)
Label biotin
Label protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270813678-B500%29?OpenDocument&hometitle=WebDocs
 
Hybridization protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270810969-B500%29?OpenDocument&hometitle=WebDocs
Scan protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3AScanning+CodeLi%28248345081-B500%29?OpenDocument&hometitle=WebDocs
Description Biopsy sample
Data processing CodeLink Expression Analysis version 4.1
 
Submission date Mar 29, 2006
Last update date Apr 27, 2006
Contact name Hiroshi Watanabe
E-mail(s) hiro.orad@tmd.ac.jp
Phone +81-43-206-4048
Organization name National institute of radiological sceiences
Street address Anagawa 4-9-1
City Inage-ku
State/province Chiba-shi
ZIP/Postal code 263+8555
Country Japan
 
Platform ID GPL2891
Series (1)
GSE4676 Gene expression profiles of oral tongue squamous cell carcinoma tissues.

Data table header descriptions
ID_REF CodeLink Feature_id
Array Logical array
Raw_intensity Raw signal intensity value
VALUE same as UNF_VALUE but with flagged values removed
Quality_flag CodeLink quality flag
Signal_strength Signal strength
Spot_mean Spot median
Spot_median Spot median
Spot_stdev Spot standard deviation
Spot_area Spot area
Spot_diameter Spot diameter
Spot_noise_level Spot noise level
Bkgd_mean Background mean
Bkgd_median Background median
Bkgd_stdev Background standard deviation
Bkgd_area Background area
UNF_VALUE Median normalized signal intensity value

Data table
ID_REF Array Raw_intensity VALUE Quality_flag Signal_strength Spot_mean Spot_median Spot_stdev Spot_area Spot_diameter Spot_noise_level Bkgd_mean Bkgd_median Bkgd_stdev Bkgd_area UNF_VALUE
109 1 143.7929 1.0648 G 2.0290 245.7929 228.0000 99.7555 142 13.4461898803711 121.140540325854 102.4211 102.0000 12.7604 257 1.0648
110 1 72.1923 0.5346 G 1.4693 174.1923 157.0000 63.0519 132 12.9640893936157 118.552176617904 104.7797 102.0000 11.0348 235 0.5346
111 1 53.4173 0.3956 G 1.3178 153.4173 144.0000 44.7353 129 12.8159236907959 116.416664827338 101.0124 100.0000 10.9444 252 0.3956
112 1 1284.3423 9.5106 G 12.5137 1380.3423 981.0000 1157.3586 151 13.8657550811768 110.306802073661 96.5420 96.0000 9.5379 246 9.5106
113 1 911.1736 6.7472 G 9.2164 1008.1736 802.0000 775.5690 146 13.6342573165894 109.389594901765 96.8745 97.0000 8.2597 257 6.7472
114 1 108.6815 0.8048 G 1.8525 205.6815 176.0000 89.9753 137 13.2073392868042 111.031139055744 96.3045 97.0000 9.3541 299 0.8048
116 1 93.8584 0.6950 G 1.6724 192.8584 172.0000 85.3500 115 12.1005182266235 115.319652005318 99.7230 99.0000 10.8798 221 0.6950
117 1 52.0625 0.3855 G 1.3105 155.0625 156.0000 35.3397 114 12.0477924346924 118.324459140465 103.8205 103.0000 10.2163 203 0.3855
118 1 31.6038 0.2340 G 1.1197 134.6038 106.0000 112.8857 53 8.21472454071045 120.212393646622 104.0171 103.0000 11.4749 181 0.2340
119 1 -0.8633 L 0.8607 104.1367 103.0000 9.9905 119 12.3091630935669 120.994313604012 105.7697 105.0000 10.6629 316 -0.0064
120 1 11.8547 L 0.9429 118.8547 117.0000 17.0210 119 12.3091630935669 126.052450639779 108.8587 107.0000 12.7016 286 0.0878
121 1 8.0118 L 0.9125 115.0118 113.0000 13.1144 85 10.4031419754028 126.040862909347 108.1067 107.0000 12.6939 233 0.0593
123 1 2.6522 L 0.8838 109.6522 106.0000 12.4991 117 12.2052869796753 124.067323612786 107.7700 107.0000 11.3782 312 0.0196
124 1 40.2571 0.2981 G 1.1907 146.2571 142.0000 29.6523 107 11.6720447540283 122.828559440702 106.8603 106.0000 11.2190 237 0.2981
125 1 35.8100 0.2652 G 1.1387 143.8100 138.0000 32.1567 102 11.396071434021 126.291749985056 108.1126 108.0000 12.1945 239 0.2652
126 1 13.2121 L 0.9751 121.2121 120.0000 16.2084 101 11.3400707244873 124.305544892499 108.4389 108.0000 10.8704 229 0.0978
127 1 6.4052 L 0.9088 114.4052 116.0000 11.3601 118 12.2573356628418 125.884669881052 108.7434 108.0000 11.9231 275 0.0474
128 1 178.8889 1.3247 G 2.3499 283.8889 227.0000 155.6921 137 13.2073392868042 120.808467982491 105.0797 105.0000 10.5390 313 1.3247
130 1 116.8991 0.8656 G 1.8660 217.8991 222.0000 67.9113 111 11.8882122039795 116.774215747536 101.2930 101.0000 10.5161 163 0.8656
131 1 203.7571 1.5088 G 2.5831 305.7571 252.0000 165.7962 142 13.4461898803711 118.367700688578 103.2717 102.0000 10.9118 286 1.5088

Total number of rows: 20469

Table truncated, full table size 2620 Kbytes.




Supplementary data files not provided
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