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Sample GSM102279 Query DataSets for GSM102279
Status Public on Mar 28, 2007
Title 1033-2
Sample type RNA
 
Source name biopsy
Organism Homo sapiens
Characteristics sample no.: 1033
age: 49
Sex: M
primary site: Tongue
pathological diagnosis: squamous cell carcinoma
t stage: T2
n status: N0
metastasis-free survival (m): 43
analytical group: Reference
Extracted molecule total RNA
Extraction protocol ISOGEN(Wako pure chemical)+RNeasy(QIAGEN)
Label biotin
Label protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270813678-B500%29?OpenDocument&hometitle=WebDocs
 
Hybridization protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270810969-B500%29?OpenDocument&hometitle=WebDocs
Scan protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3AScanning+CodeLi%28248345081-B500%29?OpenDocument&hometitle=WebDocs
Description Biopsy sample
Data processing CodeLink Expression Analysis version 4.1
 
Submission date Mar 29, 2006
Last update date Dec 23, 2014
Contact name Hiroshi Watanabe
E-mail(s) hiro.orad@tmd.ac.jp
Phone +81-43-206-4048
Organization name National institute of radiological sceiences
Street address Anagawa 4-9-1
City Inage-ku
State/province Chiba-shi
ZIP/Postal code 263+8555
Country Japan
 
Platform ID GPL2891
Series (1)
GSE4676 Gene expression profiles of oral tongue squamous cell carcinoma tissues.

Data table header descriptions
ID_REF CodeLink Feature_id
Array Logical array
Raw_intensity Raw signal intensity value
VALUE same as UNF_VALUE but with flagged values removed
Quality_flag CodeLink quality flag
Signal_strength Signal strength
Spot_mean Spot median
Spot_median Spot median
Spot_stdev Spot standard deviation
Spot_area Spot area
Spot_diameter Spot diameter
Spot_noise_level Spot noise level
Bkgd_mean Background mean
Bkgd_median Background median
Bkgd_stdev Background standard deviation
Bkgd_area Background area
UNF_VALUE Median normalized signal intensity value

Data table
ID_REF Array Raw_intensity VALUE Quality_flag Signal_strength Spot_mean Spot_median Spot_stdev Spot_area Spot_diameter Spot_noise_level Bkgd_mean Bkgd_median Bkgd_stdev Bkgd_area UNF_VALUE
109 1 157.1176 0.9933 G 2.2620 256.1176 253.0000 97.4091 85 10.4031419754028 113.225017796888 100.3409 99.0000 9.4833 228 0.9933
110 1 344.8318 2.1801 G 3.9473 442.8318 403.0000 231.9988 109 11.7806243896484 112.187367291106 99.3596 98.0000 9.4582 236 2.1801
111 1 340.8155 2.1547 G 3.8839 440.8155 419.0000 213.3135 105 11.562445640564 113.498710112393 100.5214 100.0000 8.9991 242 2.1547
112 1 596.3679 3.7703 G 6.0148 695.3679 621.0000 415.4386 108 11.7264604568481 115.610150947246 99.5368 99.0000 11.0734 239 3.7703
113 1 1056.4210 6.6788 G 9.9921 1157.4210 1090.0000 742.1634 116 12.1530151367188 115.833978194871 100.4675 101.0000 9.8893 239 6.6788
114 1 160.2791 1.0133 G 2.3027 259.2791 250.0000 82.9029 86 10.4641580581665 112.596163596566 98.8455 99.0000 9.0641 228 1.0133
116 1 137.3495 0.8683 G 2.0835 237.3495 232.0000 74.3488 105 11.562445640564 113.919976710577 98.8509 100.0000 9.2800 236 0.8683
117 1 68.9245 0.4357 G 1.4850 167.9245 165.0000 34.7157 108 11.7264604568481 113.081815858907 99.0661 99.0000 9.3879 235 0.4357
118 1 16.8061 0.1063 G 1.0259 115.8061 117.0000 13.4927 98 11.1703834533691 112.884013081943 99.2358 99.0000 9.2560 237 0.1063
119 1 31.8586 0.2014 G 1.1548 131.8586 130.0000 17.4906 101 11.3400707244873 114.187613898823 100.7124 100.0000 9.4584 234 0.2014
120 1 743.0708 4.6978 G 7.4629 843.0708 770.0000 475.8708 115 12.1005182266235 112.968918027156 100.1609 100.0000 8.6459 238 4.6978
121 1 11.4188 L 0.9801 111.4188 111.0000 10.5977 119 12.3091630935669 113.684913954085 100.0500 100.0000 9.1233 312 0.0722
123 1 23.9000 0.1511 G 1.0900 125.9000 126.0000 17.2189 70 9.44069766998291 115.504913459828 102.0136 102.0000 9.0033 228 0.1511
124 1 511.3406 3.2328 G 5.2285 614.3406 530.0000 345.9991 91 10.7640514373779 117.498718733738 103.3864 103.0000 9.6658 228 3.2328
125 1 107.3765 0.6788 G 1.7881 212.3765 202.0000 66.2974 85 10.4031419754028 118.773431153437 104.7318 105.0000 9.1823 228 0.6788
126 1 28.0556 0.1774 G 1.1082 133.0556 135.0000 20.3052 72 9.57461452484131 120.068967067793 104.6682 105.0000 10.0460 228 0.1774
127 1 26.5714 0.1680 G 1.0956 131.5714 131.0000 16.4751 98 11.1703834533691 120.094748207694 105.0647 105.0000 10.0632 240 0.1680
128 1 284.2755 1.7972 G 3.2430 389.2755 337.0000 210.3072 100 11.2837915420532 120.037082885543 104.7924 105.0000 10.0247 244 1.7972
130 1 250.5555 1.5840 G 2.9864 355.5555 332.0000 133.7346 110 11.8345403671265 119.058733888677 105.7754 105.0000 9.3725 244 1.5840
131 1 245.8087 1.5540 G 2.9062 350.8087 343.0000 115.1990 117 12.2052869796753 120.708652008295 105.1319 105.0000 10.4724 243 1.5540

Total number of rows: 20469

Table truncated, full table size 2648 Kbytes.




Supplementary data files not provided
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