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Sample GSM102283 Query DataSets for GSM102283
Status Public on Mar 28, 2007
Title 1480-2
Sample type RNA
 
Source name biopsy
Organism Homo sapiens
Characteristics squamous cell cartinoma of oral tongue, male
Extracted molecule total RNA
Extraction protocol ISOGEN(Wako pure chemical)+RNeasy(QIAGEN)
Label biotin
Label protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270813678-B500%29?OpenDocument&hometitle=WebDocs
 
Hybridization protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270810969-B500%29?OpenDocument&hometitle=WebDocs
Scan protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3AScanning+CodeLi%28248345081-B500%29?OpenDocument&hometitle=WebDocs
Description Biopsy sample
Data processing CodeLink Expression Analysis version 4.1
 
Submission date Mar 29, 2006
Last update date Apr 27, 2006
Contact name Hiroshi Watanabe
E-mail(s) hiro.orad@tmd.ac.jp
Phone +81-43-206-4048
Organization name National institute of radiological sceiences
Street address Anagawa 4-9-1
City Inage-ku
State/province Chiba-shi
ZIP/Postal code 263+8555
Country Japan
 
Platform ID GPL2891
Series (1)
GSE4676 Gene expression profiles of oral tongue squamous cell carcinoma tissues.

Data table header descriptions
ID_REF CodeLink Feature_id
Array Logical array
Raw_intensity Raw signal intensity value
VALUE same as UNF_VALUE but with flagged values removed
Quality_flag CodeLink quality flag
Signal_strength Signal strength
Spot_mean Spot median
Spot_median Spot median
Spot_stdev Spot standard deviation
Spot_area Spot area
Spot_diameter Spot diameter
Spot_noise_level Spot noise level
Bkgd_mean Background mean
Bkgd_median Background median
Bkgd_stdev Background standard deviation
Bkgd_area Background area
UNF_VALUE Median normalized signal intensity value

Data table
ID_REF Array Raw_intensity VALUE Quality_flag Signal_strength Spot_mean Spot_median Spot_stdev Spot_area Spot_diameter Spot_noise_level Bkgd_mean Bkgd_median Bkgd_stdev Bkgd_area UNF_VALUE
109 1 72.5128 0.3128 G 1.4988 171.5128 158.0000 46.5047 78 9.96557521820068 114.434587016109 99.2500 99.0000 10.2897 228 0.3128
110 1 587.0364 2.5320 G 6.0950 686.0364 677.0000 345.8618 112 11.9416427612305 112.556829863557 99.5702 99.0000 9.0379 243 2.5320
111 1 248.3925 1.0714 G 3.0950 346.3925 293.0000 201.1665 109 11.7806243896484 111.921502486557 98.6043 98.0000 9.2810 243 1.0714
112 1 1918.3273 8.2742 G 17.8154 2017.3273 2081.0000 1187.2509 112 11.9416427612305 113.235224590338 99.4085 99.0000 9.4901 243 8.2742
113 1 1706.6495 7.3612 G 15.2205 1807.6495 1714.0000 1288.0511 119 12.3091630935669 118.764359575211 102.9955 101.0000 11.8429 232 7.3612
114 1 321.0532 1.3848 G 3.7141 421.0532 409.0000 179.8947 94 10.9400415420532 113.36549170075 99.5163 100.0000 8.9103 223 1.3848
116 1 324.3947 1.3992 G 3.7468 422.3947 373.0000 244.7740 116 12.1530151367188 112.735281258195 98.9736 98.0000 9.8235 235 1.3992
117 1 170.6216 0.7359 G 2.3928 268.6216 267.0000 85.3402 113 11.9948348999023 112.264401292273 98.4425 98.0000 9.5096 234 0.7359
118 1 20.8878 0.0901 G 1.0536 121.8878 121.0000 18.4158 98 11.1703834533691 115.685894497787 100.8652 101.0000 9.7906 238 0.0901
119 1 7.4000 L 0.9483 106.4000 106.0000 11.5119 122 12.4633550643921 112.201373874511 99.5762 99.0000 8.8009 314 0.0319
120 1 92.1215 0.3973 G 1.6983 191.1215 180.0000 52.7501 109 11.7806243896484 112.538348941595 99.2350 99.0000 9.0256 225 0.3973
121 1 36.7359 0.1585 G 1.1982 136.7359 131.0000 28.3779 108 11.7264604568481 114.120868737522 99.9957 100.0000 9.4139 238 0.1585
123 1 21.0563 0.0908 G 1.0637 120.0563 120.0000 15.2379 71 9.50789165496826 112.862959949615 99.3364 99.0000 9.2420 228 0.0908
124 1 234.0345 1.0094 G 2.8947 335.0345 303.0000 154.3989 87 10.5248203277588 115.73901710376 101.9364 101.0000 9.8260 228 1.0094
125 1 121.0482 0.5221 G 1.9701 219.0482 221.0000 78.1097 83 10.2800235748291 111.185048431355 99.0591 98.0000 8.7900 228 0.5221
126 1 86.0952 0.3713 G 1.6224 184.0952 182.0000 49.7335 84 10.3417663574219 113.471715814385 98.8273 98.0000 10.3145 228 0.3713
127 1 29.9697 0.1293 G 1.1449 128.9697 128.0000 15.3672 101 11.3400707244873 112.647951847799 100.1101 99.0000 9.0986 235 0.1293
128 1 730.8558 3.1523 G 7.3677 829.8558 702.0000 603.9412 106 11.617374420166 112.635018541412 99.4449 99.0000 9.0900 244 3.1523
130 1 269.6273 1.1630 G 3.2210 369.6273 321.0000 153.4059 112 11.9416427612305 114.75711911222 100.7021 100.0000 9.8381 243 1.1630
131 1 385.2479 1.6617 G 4.3367 483.2479 462.0000 196.2892 123 12.5143299102783 111.43122292889 99.3021 98.0000 8.9542 243 1.6617

Total number of rows: 20469

Table truncated, full table size 2656 Kbytes.




Supplementary data files not provided
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