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Sample GSM102292 Query DataSets for GSM102292
Status Public on Mar 28, 2007
Title 1575-1
Sample type RNA
 
Source name biopsy
Organism Homo sapiens
Characteristics squamous cell cartinoma of oral tongue, male
Extracted molecule total RNA
Extraction protocol ISOGEN(Wako pure chemical)+RNeasy(QIAGEN)
Label biotin
Label protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270813678-B500%29?OpenDocument&hometitle=WebDocs
 
Hybridization protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270810969-B500%29?OpenDocument&hometitle=WebDocs
Scan protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3AScanning+CodeLi%28248345081-B500%29?OpenDocument&hometitle=WebDocs
Description Biopsy sample
Data processing CodeLink Expression Analysis version 4.1
 
Submission date Mar 29, 2006
Last update date Apr 27, 2006
Contact name Hiroshi Watanabe
E-mail(s) hiro.orad@tmd.ac.jp
Phone +81-43-206-4048
Organization name National institute of radiological sceiences
Street address Anagawa 4-9-1
City Inage-ku
State/province Chiba-shi
ZIP/Postal code 263+8555
Country Japan
 
Platform ID GPL2891
Series (1)
GSE4676 Gene expression profiles of oral tongue squamous cell carcinoma tissues.

Data table header descriptions
ID_REF CodeLink Feature_id
Array Logical array
Raw_intensity Raw signal intensity value
VALUE same as UNF_VALUE but with flagged values removed
Quality_flag CodeLink quality flag
Signal_strength Signal strength
Spot_mean Spot median
Spot_median Spot median
Spot_stdev Spot standard deviation
Spot_area Spot area
Spot_diameter Spot diameter
Spot_noise_level Spot noise level
Bkgd_mean Background mean
Bkgd_median Background median
Bkgd_stdev Background standard deviation
Bkgd_area Background area
UNF_VALUE Median normalized signal intensity value

Data table
ID_REF Array Raw_intensity VALUE Quality_flag Signal_strength Spot_mean Spot_median Spot_stdev Spot_area Spot_diameter Spot_noise_level Bkgd_mean Bkgd_median Bkgd_stdev Bkgd_area UNF_VALUE
109 1 243.7207 0.7211 G 3.0335 341.7207 312.0000 153.2483 113 11.9948348999023 112.647732977961 99.6035 98.0000 9.7652 235 0.7211
110 1 527.6579 1.5611 G 5.4622 627.6579 592.0000 362.1188 116 12.1530151367188 114.910087314778 100.6913 100.0000 9.9401 238 1.5611
111 1 456.4196 1.3504 G 4.9726 553.4196 455.0000 361.1684 114 12.0477924346924 111.293429612055 96.5259 97.0000 9.5290 240 1.3504
112 1 1901.9912 5.6272 G 18.2280 1997.9912 1784.0000 1335.4152 116 12.1530151367188 109.610882622015 97.4153 96.0000 9.0739 244 5.6272
113 1 3412.0000 10.0948 G 31.9105 3507.0000 3141.0000 2451.3867 120 12.3607740402222 109.90099981399 96.2043 95.0000 9.9340 238 10.0948
114 1 301.9541 0.8934 G 3.6716 396.9541 354.0000 213.1223 111 11.8882122039795 108.114428364998 96.2281 95.0000 8.7430 236 0.8934
116 1 399.9818 1.1834 G 4.4430 496.9818 511.0000 226.8706 112 11.9416427612305 111.856905090926 98.0921 97.0000 9.9046 236 1.1834
117 1 176.0555 0.5209 G 2.3983 275.0555 280.0000 89.4127 110 11.8345403671265 114.687887208346 100.2957 99.0000 10.4586 238 0.5209
118 1 53.1068 0.1571 G 1.3401 150.1068 143.0000 39.5482 105 11.562445640564 112.013009014151 97.5736 97.0000 10.0087 205 0.1571
119 1 6.5798 L 0.9435 101.5798 101.0000 10.7676 121 12.4121704101563 107.661497665244 95.0225 95.0000 8.4410 277 0.0195
120 1 364.2636 1.0777 G 4.1375 459.2636 442.0000 216.2783 112 11.9416427612305 110.99901452853 96.4386 95.0000 10.6660 236 1.0777
121 1 20.4175 0.0604 G 1.0648 114.4175 112.0000 16.6515 105 11.562445640564 107.450117032676 95.0042 94.0000 8.9667 244 0.0604
123 1 39.6739 0.1174 G 1.2169 134.6739 131.0000 28.5063 92 10.8230323791504 110.665864194048 95.0819 95.0000 10.4439 240 0.1174
124 1 261.4886 0.7736 G 3.2091 357.4886 350.0000 134.3428 88 10.5851345062256 111.397899688432 96.9591 96.0000 10.2653 228 0.7736
125 1 -9999 M -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999
126 1 74.8415 0.2214 G 1.5255 171.8415 174.0000 38.1328 82 10.2179079055786 112.642546154385 97.7682 97.0000 10.4284 228 0.2214
127 1 40.4353 0.1196 G 1.2353 136.4353 137.0000 24.5838 85 10.4031419754028 110.445270104524 96.9773 96.0000 9.6302 228 0.1196
128 1 529.8039 1.5675 G 5.2584 626.8039 628.0000 365.7886 104 11.5072546005249 119.201243788877 98.2415 97.0000 14.8008 244 1.5675
130 1 293.9460 0.8697 G 3.5521 389.9460 356.0000 166.0595 113 11.9948348999023 109.778911545905 96.9818 96.0000 9.1859 228 0.8697
131 1 238.0435 0.7043 G 3.0069 335.0435 338.0000 123.1623 117 12.2052869796753 111.425138822109 97.5336 97.0000 9.6168 231 0.7043

Total number of rows: 20469

Table truncated, full table size 2629 Kbytes.




Supplementary data files not provided
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