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Sample GSM102297 Query DataSets for GSM102297
Status Public on Mar 28, 2007
Title 1578-2
Sample type RNA
 
Source name biopsy
Organism Homo sapiens
Characteristics sample no.: 1578
age: 52
Sex: F
primary site: Tongue
pathological diagnosis: squamous cell carcinoma
t stage: T2
n status: N1
lymphatic .metastasis: +
metastasis-free survival (m): 1
analytical group: Validation
Extracted molecule total RNA
Extraction protocol ISOGEN(Wako pure chemical)+RNeasy(QIAGEN)
Label biotin
Label protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270813678-B500%29?OpenDocument&hometitle=WebDocs
 
Hybridization protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270810969-B500%29?OpenDocument&hometitle=WebDocs
Scan protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3AScanning+CodeLi%28248345081-B500%29?OpenDocument&hometitle=WebDocs
Description Biopsy sample
Data processing CodeLink Expression Analysis version 4.1
 
Submission date Mar 29, 2006
Last update date Dec 23, 2014
Contact name Hiroshi Watanabe
E-mail(s) hiro.orad@tmd.ac.jp
Phone +81-43-206-4048
Organization name National institute of radiological sceiences
Street address Anagawa 4-9-1
City Inage-ku
State/province Chiba-shi
ZIP/Postal code 263+8555
Country Japan
 
Platform ID GPL2891
Series (1)
GSE4676 Gene expression profiles of oral tongue squamous cell carcinoma tissues.

Data table header descriptions
ID_REF CodeLink Feature_id
Array Logical array
Raw_intensity Raw signal intensity value
VALUE same as UNF_VALUE but with flagged values removed
Quality_flag CodeLink quality flag
Signal_strength Signal strength
Spot_mean Spot median
Spot_median Spot median
Spot_stdev Spot standard deviation
Spot_area Spot area
Spot_diameter Spot diameter
Spot_noise_level Spot noise level
Bkgd_mean Background mean
Bkgd_median Background median
Bkgd_stdev Background standard deviation
Bkgd_area Background area
UNF_VALUE Median normalized signal intensity value

Data table
ID_REF Array Raw_intensity VALUE Quality_flag Signal_strength Spot_mean Spot_median Spot_stdev Spot_area Spot_diameter Spot_noise_level Bkgd_mean Bkgd_median Bkgd_stdev Bkgd_area UNF_VALUE
109 1 162.7232 0.7086 G 2.3931 256.7232 243.0000 97.3837 114 12.0477924346924 107.27696606411 93.8394 94.0000 8.8513 226 0.7086
110 1 362.1849 1.5773 G 4.2457 457.1849 406.0000 263.2672 121 12.4121704101563 107.680811413792 95.3349 95.0000 8.4539 220 1.5773
111 1 365.1538 1.5902 G 4.2892 458.1538 360.0000 284.1363 119 12.3091630935669 106.815452460689 93.2586 93.0000 9.2103 240 1.5902
112 1 1374.8250 5.9873 G 13.9056 1466.8250 1315.0000 1012.6871 122 12.4633550643921 105.484654264363 92.4585 92.0000 8.9898 237 5.9873
113 1 1616.4307 7.0394 G 16.2689 1708.4307 1273.0000 1330.7460 139 13.303394317627 105.012205880784 92.1773 92.0000 8.6748 292 7.0394
114 1 193.0000 0.8405 G 2.7310 284.0000 251.0000 135.0563 114 12.0477924346924 103.992176375861 90.5351 91.0000 8.6614 236 0.8405
116 1 312.6406 1.3615 G 3.8545 404.6406 343.0000 227.8787 130 12.8655023574829 104.978925916558 92.2890 92.0000 8.6526 320 1.3615
117 1 152.3590 0.6635 G 2.2924 244.3590 251.0000 75.7590 119 12.3091630935669 106.597440244888 93.1222 92.0000 9.7316 229 0.6635
118 1 30.1456 0.1313 G 1.1322 125.1456 122.0000 22.4920 105 11.562445640564 110.533834137596 95.5330 95.0000 10.3559 235 0.1313
119 1 18.9597 0.0826 G 1.0462 110.9597 110.0000 15.2778 126 12.6660251617432 106.059957553102 92.3162 92.0000 9.3733 303 0.0826
120 1 193.2672 0.8417 G 2.7345 285.2672 280.0000 115.6389 118 12.2573356628418 104.320011383242 92.3679 92.0000 8.2133 220 0.8417
121 1 16.4646 0.0717 G 1.0302 109.4646 109.0000 17.8061 101 11.3400707244873 106.25948460234 92.6250 93.0000 8.8397 240 0.0717
123 1 22.8298 0.0994 G 1.0855 114.8298 113.0000 18.1029 94 10.9400415420532 105.784239317903 92.3771 92.0000 9.1895 244 0.0994
124 1 123.4510 0.5376 G 2.0113 217.4510 191.0000 88.5143 104 11.5072546005249 108.115223902253 93.8465 94.0000 9.4102 236 0.5376
125 1 -9999 M -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999
126 1 41.4875 0.1807 G 1.2269 137.4875 135.0000 34.0668 80 10.0925302505493 112.056425361915 95.7110 96.0000 10.7043 226 0.1807
127 1 25.2427 0.1099 G 1.0926 119.2427 118.0000 13.8924 105 11.562445640564 109.132797670624 94.6391 94.0000 10.0885 238 0.1099
128 1 391.5946 1.7054 G 4.5236 484.5946 444.0000 280.0843 113 11.9948348999023 107.124742575903 92.8009 93.0000 9.4165 239 1.7054
130 1 370.4118 1.6131 G 4.3223 464.4118 425.0000 210.7599 121 12.4121704101563 107.44447856984 93.2364 94.0000 8.9630 228 1.6131
131 1 167.3729 0.7289 G 2.4345 260.3729 245.0000 91.3288 120 12.3607740402222 106.953251371458 93.3180 93.0000 9.3022 225 0.7289

Total number of rows: 20469

Table truncated, full table size 2618 Kbytes.




Supplementary data files not provided
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