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Sample GSM102301 Query DataSets for GSM102301
Status Public on Mar 28, 2007
Title 1666-2
Sample type RNA
 
Source name biopsy
Organism Homo sapiens
Characteristics sample no.: 1666
age: 59
Sex: M
primary site: Tongue
pathological diagnosis: squamous cell carcinoma
t stage: T2
n status: N0
metastasis-free survival (m): 25
analytical group: Validation
Extracted molecule total RNA
Extraction protocol ISOGEN(Wako pure chemical)+RNeasy(QIAGEN)
Label biotin
Label protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270813678-B500%29?OpenDocument&hometitle=WebDocs
 
Hybridization protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270810969-B500%29?OpenDocument&hometitle=WebDocs
Scan protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3AScanning+CodeLi%28248345081-B500%29?OpenDocument&hometitle=WebDocs
Description Biopsy sample
Data processing CodeLink Expression Analysis version 4.1
 
Submission date Mar 29, 2006
Last update date Dec 23, 2014
Contact name Hiroshi Watanabe
E-mail(s) hiro.orad@tmd.ac.jp
Phone +81-43-206-4048
Organization name National institute of radiological sceiences
Street address Anagawa 4-9-1
City Inage-ku
State/province Chiba-shi
ZIP/Postal code 263+8555
Country Japan
 
Platform ID GPL2891
Series (1)
GSE4676 Gene expression profiles of oral tongue squamous cell carcinoma tissues.

Data table header descriptions
ID_REF CodeLink Feature_id
Array Logical array
Raw_intensity Raw signal intensity value
VALUE same as UNF_VALUE but with flagged values removed
Quality_flag CodeLink quality flag
Signal_strength Signal strength
Spot_mean Spot median
Spot_median Spot median
Spot_stdev Spot standard deviation
Spot_area Spot area
Spot_diameter Spot diameter
Spot_noise_level Spot noise level
Bkgd_mean Background mean
Bkgd_median Background median
Bkgd_stdev Background standard deviation
Bkgd_area Background area
UNF_VALUE Median normalized signal intensity value

Data table
ID_REF Array Raw_intensity VALUE Quality_flag Signal_strength Spot_mean Spot_median Spot_stdev Spot_area Spot_diameter Spot_noise_level Bkgd_mean Bkgd_median Bkgd_stdev Bkgd_area UNF_VALUE
109 1 81.8364 0.3264 G 1.5856 183.8364 178.0000 52.5498 112 11.9416427612305 115.938390678986 102.0793 102.0000 9.2923 235 0.3264
110 1 159.8803 0.6377 G 2.2293 263.8803 231.0000 114.9028 119 12.3091630935669 118.369867934789 103.7217 104.0000 9.5799 238 0.6377
111 1 227.3540 0.9069 G 2.7777 330.3540 260.0000 182.9379 115 12.1005182266235 118.929884836872 104.2149 103.0000 10.6199 236 0.9069
112 1 1469.3390 5.8609 G 13.5564 1570.3390 1358.0000 1056.8975 120 12.3607740402222 115.837534216721 102.0256 101.0000 9.8917 242 5.8609
113 1 1788.2015 7.1327 G 16.2113 1890.2015 1621.0000 1418.2568 136 13.1590490341187 116.598024418745 102.3582 102.0000 9.7320 292 7.1327
114 1 100.7037 0.4017 G 1.7534 202.7037 193.0000 70.5396 110 11.8345403671265 115.607585709222 102.2915 102.0000 9.0717 231 0.4017
116 1 248.7895 0.9924 G 3.0242 350.7895 303.0000 187.6572 116 12.1530151367188 115.993421888713 101.6167 102.0000 9.3290 235 0.9924
117 1 132.4865 0.5285 G 2.0379 233.4865 229.0000 70.2786 113 11.9948348999023 114.572837936444 100.7345 101.0000 9.0486 234 0.5285
118 1 28.1078 0.1121 G 1.1117 132.1078 130.0000 20.4685 104 11.5072546005249 118.831132442983 103.7626 104.0000 9.8874 227 0.1121
119 1 1.0702 L 0.8805 105.0702 106.0000 10.4694 116 12.1530151367188 119.334953408674 105.2643 104.0000 10.2233 290 0.0043
120 1 92.4953 0.3689 G 1.6738 193.4953 190.0000 56.0279 109 11.7806243896484 115.600370654694 100.7696 101.0000 9.7336 238 0.3689
121 1 12.2143 L 0.9869 112.2143 111.0000 13.7694 100 11.2837915420532 113.7034390724 99.6407 100.0000 9.1356 239 0.0487
123 1 20.7979 0.0830 G 1.0593 120.7979 121.0000 18.4815 94 10.9400415420532 114.040845899581 99.9437 100.0000 9.3606 239 0.0830
124 1 129.2688 0.5156 G 2.0277 228.2688 216.0000 83.4244 93 10.8816947937012 112.576063573109 99.6179 99.0000 9.0507 220 0.5156
125 1 -9999 M -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999
126 1 44.6939 0.1783 G 1.2801 143.6939 136.0000 33.7997 98 11.1703834533691 112.248645049604 99.1018 99.0000 8.8324 234 0.1783
127 1 25.4059 0.1013 G 1.0980 126.4059 123.0000 17.9896 103 11.4517974853516 115.125336556297 100.5714 101.0000 9.4169 239 0.1013
128 1 354.8518 1.4154 G 3.9463 456.8518 435.0000 249.4906 110 11.8345403671265 115.766579642257 101.6043 102.0000 9.1777 243 1.4154
130 1 256.1293 1.0216 G 3.2053 352.1293 339.0000 137.1712 118 12.2573356628418 109.857045449051 97.0370 96.0000 9.2380 224 1.0216
131 1 183.2419 0.7309 G 2.5469 280.2419 265.0000 108.9037 126 12.6660251617432 110.030443112631 97.2995 97.0000 8.6870 225 0.7309

Total number of rows: 20469

Table truncated, full table size 2624 Kbytes.




Supplementary data files not provided
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