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Sample GSM102302 Query DataSets for GSM102302
Status Public on Mar 28, 2007
Title 1667-1
Sample type RNA
 
Source name biopsy
Organism Homo sapiens
Characteristics sample no.: 1667
age: 62
Sex: M
primary site: Tongue
pathological diagnosis: squamous cell carcinoma
t stage: T2
n status: N0
metastasis-free survival (m): 25
analytical group: Validation
Extracted molecule total RNA
Extraction protocol ISOGEN(Wako pure chemical)+RNeasy(QIAGEN)
Label biotin
Label protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270813678-B500%29?OpenDocument&hometitle=WebDocs
 
Hybridization protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270810969-B500%29?OpenDocument&hometitle=WebDocs
Scan protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3AScanning+CodeLi%28248345081-B500%29?OpenDocument&hometitle=WebDocs
Description Biopsy sample
Data processing CodeLink Expression Analysis version 4.1
 
Submission date Mar 29, 2006
Last update date Dec 23, 2014
Contact name Hiroshi Watanabe
E-mail(s) hiro.orad@tmd.ac.jp
Phone +81-43-206-4048
Organization name National institute of radiological sceiences
Street address Anagawa 4-9-1
City Inage-ku
State/province Chiba-shi
ZIP/Postal code 263+8555
Country Japan
 
Platform ID GPL2891
Series (1)
GSE4676 Gene expression profiles of oral tongue squamous cell carcinoma tissues.

Data table header descriptions
ID_REF CodeLink Feature_id
Array Logical array
Raw_intensity Raw signal intensity value
VALUE same as UNF_VALUE but with flagged values removed
Quality_flag CodeLink quality flag
Signal_strength Signal strength
Spot_mean Spot median
Spot_median Spot median
Spot_stdev Spot standard deviation
Spot_area Spot area
Spot_diameter Spot diameter
Spot_noise_level Spot noise level
Bkgd_mean Background mean
Bkgd_median Background median
Bkgd_stdev Background standard deviation
Bkgd_area Background area
UNF_VALUE Median normalized signal intensity value

Data table
ID_REF Array Raw_intensity VALUE Quality_flag Signal_strength Spot_mean Spot_median Spot_stdev Spot_area Spot_diameter Spot_noise_level Bkgd_mean Bkgd_median Bkgd_stdev Bkgd_area UNF_VALUE
109 1 169.1284 0.4275 G 1.8789 320.1284 298.0000 112.6185 111 11.8882122039795 170.381456902045 150.7181 151.0000 12.9210 235 0.4275
110 1 524.0965 1.3248 G 3.8373 677.0965 572.0000 406.3292 116 12.1530151367188 176.453338212812 152.9234 153.0000 15.6356 243 1.3248
111 1 222.8018 0.5632 G 2.1962 373.8018 311.0000 195.8822 113 11.9948348999023 170.206912394219 150.3463 151.0000 12.8046 239 0.5632
112 1 1897.7395 4.7971 G 12.1209 2046.7395 1592.0000 1429.6835 121 12.4121704101563 168.860819928165 149.5541 149.0000 13.2405 239 4.7971
113 1 1974.9199 4.9922 G 12.1038 2126.9199 1823.0000 1557.3855 127 12.7161874771118 175.723336563515 153.1839 152.0000 15.8156 231 4.9922
114 1 314.8241 0.7958 G 2.6989 466.8241 420.0000 238.0854 110 11.8345403671265 172.965628461738 153.8784 152.0000 13.9771 230 0.7958
116 1 263.6696 0.6665 G 2.4100 415.6696 348.0000 225.2102 117 12.2052869796753 172.475162192161 152.3074 152.0000 13.6501 239 0.6665
117 1 232.9375 0.5888 G 2.1975 386.9375 381.0000 135.8656 114 12.0477924346924 176.08184419818 154.0881 154.0000 14.7212 235 0.5888
118 1 14.4237 L 0.9706 169.4237 166.0000 22.4580 120 12.3607740402222 174.551711356448 155.0819 155.0000 13.0345 305 0.0365
119 1 66.3084 0.1676 G 1.2568 221.3084 220.0000 45.4046 109 11.7806243896484 176.08545724591 155.9518 155.0000 14.0570 236 0.1676
120 1 68.4854 0.1731 G 1.2725 222.4854 219.0000 45.3018 105 11.562445640564 174.840372081084 156.0679 154.0000 13.8936 229 0.1731
121 1 8.8400 L 0.9213 166.8400 166.0000 19.6828 50 7.97884559631348 181.092283994527 158.9375 158.0000 15.3949 182 0.0223
123 1 23.9011 0.0604 G 1.0255 176.9011 172.0000 21.2872 91 10.7640514373779 172.501953494168 153.9052 153.0000 13.0013 240 0.0604
124 1 267.7576 0.6768 G 2.3987 423.7576 388.0000 194.0521 101 11.3400707244873 176.664576088347 156.8147 156.0000 13.7764 240 0.6768
125 1 -9999 M -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999
126 1 190.4344 0.4814 G 1.9681 345.4344 327.0000 136.0865 99 11.2272310256958 175.515472207544 156.0793 155.0000 13.6770 235 0.4814
127 1 35.3077 0.0892 G 1.0832 188.3077 188.0000 29.4964 106 11.617374420166 173.844861750232 153.4935 153.0000 13.8966 237 0.0892
128 1 987.6881 2.4967 G 6.5590 1141.6881 912.0000 774.7454 111 11.8882122039795 174.064722474592 154.7359 154.0000 13.3765 239 2.4967
130 1 463.8804 1.1726 G 3.6259 614.8804 562.0000 283.3806 119 12.3091630935669 169.578015599497 151.4480 151.0000 12.3853 229 1.1726
131 1 586.5750 1.4827 G 4.2883 738.5750 674.0000 376.2565 122 12.4633550643921 172.231921922623 151.0370 152.0000 13.4879 224 1.4827

Total number of rows: 20469

Table truncated, full table size 2691 Kbytes.




Supplementary data files not provided
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