NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM102304 Query DataSets for GSM102304
Status Public on Mar 28, 2007
Title 1668-1
Sample type RNA
 
Source name biopsy
Organism Homo sapiens
Characteristics sample no.: 1668
age: 41
Sex: M
primary site: Tongue
pathological diagnosis: squamous cell carcinoma
t stage: T2
n status: N0
lymphatic .metastasis: +
metastasis-free survival (m): 3
analytical group: Validation
Extracted molecule total RNA
Extraction protocol ISOGEN(Wako pure chemical)+RNeasy(QIAGEN)
Label biotin
Label protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270813678-B500%29?OpenDocument&hometitle=WebDocs
 
Hybridization protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270810969-B500%29?OpenDocument&hometitle=WebDocs
Scan protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3AScanning+CodeLi%28248345081-B500%29?OpenDocument&hometitle=WebDocs
Description Biopsy sample
Data processing CodeLink Expression Analysis version 4.1
 
Submission date Mar 29, 2006
Last update date Dec 23, 2014
Contact name Hiroshi Watanabe
E-mail(s) hiro.orad@tmd.ac.jp
Phone +81-43-206-4048
Organization name National institute of radiological sceiences
Street address Anagawa 4-9-1
City Inage-ku
State/province Chiba-shi
ZIP/Postal code 263+8555
Country Japan
 
Platform ID GPL2891
Series (1)
GSE4676 Gene expression profiles of oral tongue squamous cell carcinoma tissues.

Data table header descriptions
ID_REF CodeLink Feature_id
Array Logical array
Raw_intensity Raw signal intensity value
VALUE same as UNF_VALUE but with flagged values removed
Quality_flag CodeLink quality flag
Signal_strength Signal strength
Spot_mean Spot median
Spot_median Spot median
Spot_stdev Spot standard deviation
Spot_area Spot area
Spot_diameter Spot diameter
Spot_noise_level Spot noise level
Bkgd_mean Background mean
Bkgd_median Background median
Bkgd_stdev Background standard deviation
Bkgd_area Background area
UNF_VALUE Median normalized signal intensity value

Data table
ID_REF Array Raw_intensity VALUE Quality_flag Signal_strength Spot_mean Spot_median Spot_stdev Spot_area Spot_diameter Spot_noise_level Bkgd_mean Bkgd_median Bkgd_stdev Bkgd_area UNF_VALUE
109 1 131.1743 0.3462 G 1.6451 280.1743 269.0000 87.0773 111 11.8882122039795 170.311527579587 149.1724 149.0000 14.2077 240 0.3462
110 1 572.1512 1.5102 G 4.1906 719.1512 604.0000 428.1609 121 12.4121704101563 171.609907151039 148.9000 147.0000 16.4066 238 1.5102
111 1 263.6727 0.6960 G 2.4551 409.6727 347.0000 211.3482 112 11.9416427612305 166.865190979624 148.0793 146.0000 13.9101 235 0.6960
112 1 1974.4546 5.2115 G 12.7196 2121.4546 1680.0000 1492.2141 123 12.5143299102783 166.786169646054 148.5348 147.0000 13.1908 238 5.2115
113 1 2317.9758 6.1182 G 14.5002 2465.9758 1885.0000 1787.0708 126 12.6660251617432 170.06452468332 148.8219 148.0000 14.7097 227 6.1182
114 1 245.9009 0.6490 G 2.2841 395.9009 349.0000 182.8410 113 11.9948348999023 173.329382960174 150.7098 150.0000 15.5529 232 0.6490
116 1 304.9083 0.8048 G 2.6160 455.9083 368.0000 244.8340 122 12.4633550643921 174.276791613066 151.0346 151.0000 15.5179 239 0.8048
117 1 248.5130 0.6559 G 2.3412 397.5130 381.0000 136.4564 117 12.2052869796753 169.793914656507 150.1504 149.0000 13.8626 234 0.6559
118 1 20.1345 L 0.9756 170.1345 167.0000 24.1758 121 12.4121704101563 174.386464732132 151.2484 150.0000 16.2576 318 0.0531
119 1 60.8932 0.1607 G 1.1906 210.8932 208.0000 42.8678 105 11.562445640564 177.124911830542 153.2643 150.0000 18.0833 235 0.1607
120 1 93.3529 0.2464 G 1.4145 242.3529 232.0000 55.3533 104 11.5072546005249 171.335611792149 150.9217 149.0000 14.8904 238 0.2464
121 1 15.7778 L 0.9391 166.7778 163.0000 27.3535 101 11.3400707244873 177.584028023843 153.1509 151.0000 17.7227 240 0.0416
123 1 24.2211 0.0639 G 1.0208 176.2211 173.0000 21.2411 95 10.9980792999268 172.637621879938 152.8377 152.0000 13.7584 236 0.0639
124 1 164.1386 0.4332 G 1.7787 315.1386 303.0000 104.9101 103 11.4517974853516 177.176707135232 153.6956 151.0000 17.4511 238 0.4332
125 1 -9999 M -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999
126 1 90.6118 0.2392 G 1.3288 248.6118 251.0000 58.0777 85 10.4031419754028 187.0969701961 158.9818 158.0000 19.3980 228 0.2392
127 1 46.9524 0.1239 G 1.1103 200.9524 198.0000 35.3616 107 11.6720447540283 180.981925649615 156.1087 154.0000 17.9880 238 0.1239
128 1 960.6296 2.5355 G 6.2267 1114.6296 983.0000 714.8067 110 11.8345403671265 179.008048113929 156.6580 154.0000 16.6720 239 2.5355
130 1 333.4159 0.8800 G 2.6736 488.4159 460.0000 181.2295 115 12.1005182266235 182.681345869 156.5811 155.0000 18.4542 230 0.8800
131 1 465.0079 1.2274 G 3.4383 617.0079 571.0000 294.4597 129 12.8159236907959 179.453308393069 156.2068 152.0000 18.3022 307 1.2274

Total number of rows: 20469

Table truncated, full table size 2683 Kbytes.




Supplementary data files not provided
| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap