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Sample GSM102308 Query DataSets for GSM102308
Status Public on Mar 28, 2007
Title 1670-1
Sample type RNA
 
Source name biopsy
Organism Homo sapiens
Characteristics sample no.: 1670
age: 56
Sex: M
primary site: Tongue
pathological diagnosis: squamous cell carcinoma
t stage: T2
n status: N0
lymphatic .metastasis: +
metastasis-free survival (m): 3
analytical group: Validation
Extracted molecule total RNA
Extraction protocol ISOGEN(Wako pure chemical)+RNeasy(QIAGEN)
Label biotin
Label protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270813678-B500%29?OpenDocument&hometitle=WebDocs
 
Hybridization protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270810969-B500%29?OpenDocument&hometitle=WebDocs
Scan protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3AScanning+CodeLi%28248345081-B500%29?OpenDocument&hometitle=WebDocs
Description Biopsy sample
Data processing CodeLink Expression Analysis version 4.1
 
Submission date Mar 29, 2006
Last update date Dec 23, 2014
Contact name Hiroshi Watanabe
E-mail(s) hiro.orad@tmd.ac.jp
Phone +81-43-206-4048
Organization name National institute of radiological sceiences
Street address Anagawa 4-9-1
City Inage-ku
State/province Chiba-shi
ZIP/Postal code 263+8555
Country Japan
 
Platform ID GPL2891
Series (1)
GSE4676 Gene expression profiles of oral tongue squamous cell carcinoma tissues.

Data table header descriptions
ID_REF CodeLink Feature_id
Array Logical array
Raw_intensity Raw signal intensity value
VALUE same as UNF_VALUE but with flagged values removed
Quality_flag CodeLink quality flag
Signal_strength Signal strength
Spot_mean Spot median
Spot_median Spot median
Spot_stdev Spot standard deviation
Spot_area Spot area
Spot_diameter Spot diameter
Spot_noise_level Spot noise level
Bkgd_mean Background mean
Bkgd_median Background median
Bkgd_stdev Background standard deviation
Bkgd_area Background area
UNF_VALUE Median normalized signal intensity value

Data table
ID_REF Array Raw_intensity VALUE Quality_flag Signal_strength Spot_mean Spot_median Spot_stdev Spot_area Spot_diameter Spot_noise_level Bkgd_mean Bkgd_median Bkgd_stdev Bkgd_area UNF_VALUE
109 1 106.4364 1.5755 G 1.8504 198.4364 171.0000 91.2455 521 25.7557334899902 107.238787876914 92.4048 92.0000 10.1592 1048 1.5755
110 1 61.8810 0.9160 G 1.4327 153.8810 130.0000 64.1165 514 25.582124710083 107.405543764877 93.3213 92.0000 10.2704 1094 0.9160
111 1 33.2846 0.4927 G 1.1647 124.2846 118.0000 28.8031 502 25.28173828125 106.708283851005 92.4282 91.0000 10.4722 1160 0.4927
112 1 240.0618 3.5536 G 3.0947 332.0618 235.0000 234.6992 528 25.9281787872314 107.300888449889 92.4458 92.0000 10.2006 1154 3.5536
113 1 290.6635 4.3026 G 3.5069 384.6635 337.0000 238.5718 539 26.1968727111816 109.686536067686 93.6549 94.0000 10.4577 1122 4.3026
114 1 32.5735 0.4822 G 1.1517 125.5735 116.0000 32.1758 491 25.0032119750977 109.030775339155 93.2683 93.0000 10.6872 1168 0.4822
116 1 69.9813 1.0359 G 1.5008 161.9813 138.0000 65.4532 490 24.9777374267578 107.929196490945 92.9830 92.0000 10.6195 1162 1.0359
117 1 26.9084 0.3983 G 1.1088 119.9084 116.0000 23.7402 434 23.5071468353271 108.140441042162 93.4681 93.0000 10.0936 963 0.3983
118 1 2.2331 L 0.8716 94.2331 93.0000 12.3968 332 20.5600471496582 108.1206384178 92.8423 92.0000 10.7471 964 0.0331
119 1 1.4507 L 0.8704 93.4507 93.0000 11.7554 381 22.0250835418701 107.364976002401 92.4757 92.0000 10.2433 1028 0.0215
120 1 19.2734 0.2853 G 1.0304 112.2734 112.0000 16.6026 425 23.2621326446533 108.964231630674 93.3919 93.0000 10.6428 901 0.2853
121 1 2.6892 L 0.8868 94.6892 94.0000 11.3175 331 20.5290603637695 106.773311445753 92.7839 92.0000 9.8489 996 0.0398
123 1 8.7601 L 0.9388 100.7601 99.0000 13.8717 377 21.9091606140137 107.323056107169 92.6908 92.0000 10.2154 906 0.1297
124 1 68.8373 1.0190 G 1.4892 161.8373 141.0000 61.3838 432 23.4529209136963 108.673475675674 93.7469 93.0000 10.4490 937 1.0190
125 1 24.5144 0.3629 G 1.0877 117.5144 113.0000 24.5883 426 23.2894840240479 108.039006987265 93.5446 93.0000 10.0260 969 0.3629
126 1 6.5359 L 0.9203 99.5359 98.0000 12.5310 340 20.8062839508057 108.156081837538 92.9979 93.0000 10.1041 995 0.0967
127 1 6.7558 L 0.9183 99.7558 98.0000 12.9199 350 21.1100406646729 108.625107448732 93.5256 93.0000 10.4167 995 0.1000
128 1 87.9128 1.3014 G 1.6669 180.9128 152.0000 82.4987 444 23.776424407959 108.53024161814 93.4221 93.0000 10.3535 995 1.3014
130 1 107.4508 1.5906 G 1.8327 200.4508 174.0000 77.6535 496 25.1301975250244 109.377404761352 93.6429 93.0000 10.9183 1092 1.5906
131 1 62.4162 0.9239 G 1.4310 155.4162 142.0000 55.8580 505 25.3571681976318 108.609147783382 92.8651 93.0000 10.4061 1065 0.9239

Total number of rows: 20469

Table truncated, full table size 2596 Kbytes.




Supplementary data files not provided
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