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Sample GSM102312 Query DataSets for GSM102312
Status Public on Mar 28, 2007
Title 1672-1
Sample type RNA
 
Source name biopsy
Organism Homo sapiens
Characteristics sample no.: 1672
age: 60
Sex: F
primary site: Tongue
pathological diagnosis: squamous cell carcinoma
t stage: T2
n status: N0
metastasis-free survival (m): 17
analytical group: Validation
Extracted molecule total RNA
Extraction protocol ISOGEN(Wako pure chemical)+RNeasy(QIAGEN)
Label biotin
Label protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270813678-B500%29?OpenDocument&hometitle=WebDocs
 
Hybridization protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270810969-B500%29?OpenDocument&hometitle=WebDocs
Scan protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3AScanning+CodeLi%28248345081-B500%29?OpenDocument&hometitle=WebDocs
Description Biopsy sample
Data processing CodeLink Expression Analysis version 4.1
 
Submission date Mar 29, 2006
Last update date Dec 23, 2014
Contact name Hiroshi Watanabe
E-mail(s) hiro.orad@tmd.ac.jp
Phone +81-43-206-4048
Organization name National institute of radiological sceiences
Street address Anagawa 4-9-1
City Inage-ku
State/province Chiba-shi
ZIP/Postal code 263+8555
Country Japan
 
Platform ID GPL2891
Series (1)
GSE4676 Gene expression profiles of oral tongue squamous cell carcinoma tissues.

Data table header descriptions
ID_REF CodeLink Feature_id
Array Logical array
Raw_intensity Raw signal intensity value
VALUE same as UNF_VALUE but with flagged values removed
Quality_flag CodeLink quality flag
Signal_strength Signal strength
Spot_mean Spot median
Spot_median Spot median
Spot_stdev Spot standard deviation
Spot_area Spot area
Spot_diameter Spot diameter
Spot_noise_level Spot noise level
Bkgd_mean Background mean
Bkgd_median Background median
Bkgd_stdev Background standard deviation
Bkgd_area Background area
UNF_VALUE Median normalized signal intensity value

Data table
ID_REF Array Raw_intensity VALUE Quality_flag Signal_strength Spot_mean Spot_median Spot_stdev Spot_area Spot_diameter Spot_noise_level Bkgd_mean Bkgd_median Bkgd_stdev Bkgd_area UNF_VALUE
109 1 44.8460 0.7407 G 1.2519 141.8460 136.0000 37.1583 443 23.7496337890625 113.301121489329 97.3918 97.0000 10.8674 937 0.7407
110 1 88.2433 1.4575 G 1.6341 186.2433 161.0000 82.9342 493 25.0540828704834 113.973348865141 97.4763 98.0000 10.6489 1100 1.4575
111 1 42.3528 0.6995 G 1.2236 140.3528 130.0000 37.0629 487 24.9011573791504 114.702232503148 98.2274 98.0000 11.1348 1154 0.6995
112 1 184.2244 3.0429 G 2.4279 284.2244 227.0000 161.0265 467 24.3844795227051 117.064326958211 100.5011 100.0000 11.3762 988 3.0429
113 1 224.4921 3.7080 G 2.8209 322.4921 265.0000 184.2070 514 25.582124710083 114.323698833748 98.2288 98.0000 10.8825 1141 3.7080
114 1 38.9184 0.6428 G 1.2065 135.9184 127.0000 34.9500 437 23.5882530212402 112.651460476219 97.1895 97.0000 10.4343 956 0.6428
116 1 79.9122 1.3199 G 1.5618 175.9122 158.0000 67.6786 441 23.6959629058838 112.635191948477 97.1108 96.0000 11.0901 995 1.3199
117 1 30.2951 0.5004 G 1.1185 126.2951 125.0000 21.6843 418 23.069766998291 112.916856000028 96.9579 96.0000 11.2779 938 0.5004
118 1 8.6683 L 0.9263 104.6683 98.0000 34.3059 209 16.3127880096436 112.991798962856 97.0260 96.0000 11.3279 719 0.1432
119 1 0.5370 L 0.8601 95.5370 95.0000 11.1327 261 18.2295227050781 111.070916210646 95.5064 95.0000 10.7139 808 0.0089
120 1 26.3604 0.4354 G 1.0871 121.3604 122.0000 18.7237 402 22.6239318847656 111.63478917471 96.3475 95.0000 11.0899 956 0.4354
121 1 0.4748 L 0.8612 95.4748 95.0000 11.2597 383 22.0828151702881 110.857203680943 96.1656 95.0000 10.5715 1099 0.0078
123 1 7.0000 L 0.9177 104.0000 103.0000 14.4103 356 21.2902164459229 113.325088527185 97.3371 97.0000 10.8834 917 0.1156
124 1 126.6754 2.0923 G 1.9737 222.6754 197.0000 98.4585 388 22.2264919281006 112.818857864798 96.7268 96.0000 11.2126 808 2.0923
125 1 24.8936 0.4112 G 1.0853 121.8936 121.0000 21.1668 363 21.4985103607178 112.311536512331 97.3273 97.0000 10.2077 808 0.4112
126 1 8.9639 L 0.9420 105.9639 105.0000 13.8270 338 20.7449989318848 112.488211594804 97.8462 97.0000 10.3255 994 0.1481
127 1 4.8303 L 0.8970 101.8303 101.0000 11.9760 389 22.2551155090332 113.520604102341 97.9306 97.0000 11.0137 1185 0.0798
128 1 101.8654 1.6825 G 1.7595 198.8654 178.0000 86.6047 424 23.234748840332 113.025780145097 97.6545 97.0000 10.6839 996 1.6825
130 1 268.3194 4.4319 G 3.2549 364.3194 320.0000 175.6022 462 24.2535915374756 111.930751273267 97.0658 96.0000 10.6205 933 4.4319
131 1 78.6119 1.2984 G 1.5480 174.6119 166.0000 56.8357 495 25.104850769043 112.798348320482 97.3883 96.0000 11.1989 1141 1.2984

Total number of rows: 20469

Table truncated, full table size 2599 Kbytes.




Supplementary data files not provided
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