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Sample GSM102313 Query DataSets for GSM102313
Status Public on Mar 28, 2007
Title 1672-2
Sample type RNA
 
Source name biopsy
Organism Homo sapiens
Characteristics sample no.: 1672
age: 60
Sex: F
primary site: Tongue
pathological diagnosis: squamous cell carcinoma
t stage: T2
n status: N0
metastasis-free survival (m): 17
analytical group: Validation
Extracted molecule total RNA
Extraction protocol ISOGEN(Wako pure chemical)+RNeasy(QIAGEN)
Label biotin
Label protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270813678-B500%29?OpenDocument&hometitle=WebDocs
 
Hybridization protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270810969-B500%29?OpenDocument&hometitle=WebDocs
Scan protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3AScanning+CodeLi%28248345081-B500%29?OpenDocument&hometitle=WebDocs
Description Biopsy sample
Data processing CodeLink Expression Analysis version 4.1
 
Submission date Mar 29, 2006
Last update date Dec 23, 2014
Contact name Hiroshi Watanabe
E-mail(s) hiro.orad@tmd.ac.jp
Phone +81-43-206-4048
Organization name National institute of radiological sceiences
Street address Anagawa 4-9-1
City Inage-ku
State/province Chiba-shi
ZIP/Postal code 263+8555
Country Japan
 
Platform ID GPL2891
Series (1)
GSE4676 Gene expression profiles of oral tongue squamous cell carcinoma tissues.

Data table header descriptions
ID_REF CodeLink Feature_id
Array Logical array
Raw_intensity Raw signal intensity value
VALUE same as UNF_VALUE but with flagged values removed
Quality_flag CodeLink quality flag
Signal_strength Signal strength
Spot_mean Spot median
Spot_median Spot median
Spot_stdev Spot standard deviation
Spot_area Spot area
Spot_diameter Spot diameter
Spot_noise_level Spot noise level
Bkgd_mean Background mean
Bkgd_median Background median
Bkgd_stdev Background standard deviation
Bkgd_area Background area
UNF_VALUE Median normalized signal intensity value

Data table
ID_REF Array Raw_intensity VALUE Quality_flag Signal_strength Spot_mean Spot_median Spot_stdev Spot_area Spot_diameter Spot_noise_level Bkgd_mean Bkgd_median Bkgd_stdev Bkgd_area UNF_VALUE
109 1 40.0128 0.6986 G 1.2154 136.0128 129.0000 31.6934 475 24.5924530029297 111.910722398731 96.9421 96.0000 10.6071 1042 0.6986
110 1 94.6836 1.6530 G 1.6835 192.6836 158.0000 87.2230 503 25.30690574646 114.456222313522 97.8172 98.0000 10.9708 1054 1.6530
111 1 46.7086 0.8155 G 1.2663 143.7086 134.0000 42.9077 461 24.2273273468018 113.491213838016 97.9665 97.0000 10.9941 994 0.8155
112 1 242.7355 4.2378 G 3.0006 339.7355 270.0000 209.2292 473 24.5406265258789 113.224389879557 97.6303 97.0000 10.8163 982 4.2378
113 1 228.2879 3.9856 G 2.8763 325.2879 265.0000 187.7968 524 25.8297805786133 113.091747155789 97.1695 97.0000 10.7278 1167 3.9856
114 1 38.4573 0.6714 G 1.1905 135.4573 127.0000 36.1306 441 23.6959629058838 113.781127299308 97.7346 97.0000 11.1874 995 0.6714
116 1 68.9142 1.2031 G 1.4663 164.9142 148.0000 56.3402 451 23.9631175994873 112.46856621431 97.2469 96.0000 10.9790 994 1.2031
117 1 29.7221 0.5189 G 1.1073 125.7221 122.0000 24.6187 429 23.3713455200195 113.538034523471 96.8225 96.0000 11.6920 996 0.5189
118 1 1.0883 L 0.8581 97.0883 97.0000 11.8973 391 22.3122539520264 113.145175596197 97.2773 96.0000 11.4301 1164 0.0190
119 1 0.9180 L 0.8641 95.9180 95.0000 12.1438 384 22.1116256713867 111.000600308287 95.3911 95.0000 10.6671 908 0.0160
120 1 29.7656 0.5197 G 1.1120 125.7656 124.0000 19.6466 409 22.8200569152832 113.09406462045 96.3429 96.0000 11.3960 908 0.5197
121 1 4.4199 L 0.8931 98.4199 96.0000 25.5281 387 22.1978302001953 110.199970968617 94.9104 94.0000 10.8000 1220 0.0772
123 1 5.6533 L 0.9060 100.6533 101.0000 12.5746 406 22.7362098693848 111.097597938103 95.8098 95.0000 10.7317 1101 0.0987
124 1 87.9766 1.5359 G 1.6458 183.9766 170.0000 71.1775 390 22.2837028503418 111.786990179335 95.8850 96.0000 10.5247 806 1.5359
125 1 19.5733 0.3417 G 1.0262 115.5733 115.0000 20.8231 388 22.2264919281006 112.625730804613 96.0616 96.0000 11.0838 996 0.3417
126 1 8.4007 L 0.9298 102.4007 101.0000 14.6162 303 19.6415786743164 110.136322240496 94.9240 94.0000 10.7576 808 0.1467
127 1 6.1919 L 0.9046 101.1919 100.0000 12.5927 275 18.7120513916016 111.8600665645 95.4034 95.0000 11.2400 808 0.1081
128 1 102.3246 1.7864 G 1.7643 197.3246 165.0000 94.1840 430 23.3985691070557 111.842343885124 95.5992 95.0000 11.2282 996 1.7864
130 1 191.0889 3.3361 G 2.5578 287.0889 254.0000 120.4658 458 24.1483688354492 112.240282984582 96.6352 96.0000 10.8269 946 3.3361
131 1 70.3557 1.2283 G 1.4849 164.3557 161.0000 51.1611 469 24.4366397857666 110.68323805308 94.4400 94.0000 11.1222 972 1.2283

Total number of rows: 20469

Table truncated, full table size 2610 Kbytes.




Supplementary data files not provided
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