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Sample GSM102326 Query DataSets for GSM102326
Status Public on Mar 28, 2007
Title 1257-1
Sample type RNA
 
Source name biopsy
Organism Homo sapiens
Characteristics squamous cell cartinoma of oral tongue, male
Extracted molecule total RNA
Extraction protocol ISOGEN(Wako pure chemical)+RNeasy(QIAGEN)
Label biotin
Label protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270813678-B500%29?OpenDocument&hometitle=WebDocs
 
Hybridization protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270810969-B500%29?OpenDocument&hometitle=WebDocs
Scan protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3AScanning+CodeLi%28248345081-B500%29?OpenDocument&hometitle=WebDocs
Description Biopsy sample
Data processing CodeLink Expression Analysis version 4.1
 
Submission date Mar 29, 2006
Last update date Apr 27, 2006
Contact name Hiroshi Watanabe
E-mail(s) hiro.orad@tmd.ac.jp
Phone +81-43-206-4048
Organization name National institute of radiological sceiences
Street address Anagawa 4-9-1
City Inage-ku
State/province Chiba-shi
ZIP/Postal code 263+8555
Country Japan
 
Platform ID GPL2891
Series (1)
GSE4676 Gene expression profiles of oral tongue squamous cell carcinoma tissues.

Data table header descriptions
ID_REF CodeLink Feature_id
Array Logical array
Raw_intensity Raw signal intensity value
VALUE same as UNF_VALUE but with flagged values removed
Quality_flag CodeLink quality flag
Signal_strength Signal strength
Spot_mean Spot median
Spot_median Spot median
Spot_stdev Spot standard deviation
Spot_area Spot area
Spot_diameter Spot diameter
Spot_noise_level Spot noise level
Bkgd_mean Background mean
Bkgd_median Background median
Bkgd_stdev Background standard deviation
Bkgd_area Background area
UNF_VALUE Median normalized signal intensity value

Data table
ID_REF Array Raw_intensity VALUE Quality_flag Signal_strength Spot_mean Spot_median Spot_stdev Spot_area Spot_diameter Spot_noise_level Bkgd_mean Bkgd_median Bkgd_stdev Bkgd_area UNF_VALUE
109 1 100.2240 0.4836 G 1.5229 225.2240 202.0000 77.2101 127 12.7161874771118 147.892171831525 126.6729 125.0000 15.2614 276 0.4836
110 1 396.6774 1.9139 G 3.5458 522.6774 480.0000 288.1009 126 12.6660251617432 147.407943294687 127.9806 126.0000 14.2720 214 1.9139
111 1 236.0305 1.1388 G 2.5006 357.0305 269.0000 214.4608 133 13.0131034851074 142.779879930989 122.9844 121.0000 14.5199 266 1.1388
112 1 760.5940 3.6698 G 6.4810 876.5940 593.0000 681.9721 135 13.1105813980103 135.255869760654 117.4743 116.0000 12.8372 263 3.6698
113 1 1609.8188 7.7673 G 12.7672 1726.8188 1541.0000 1278.2229 140 13.3511619567871 135.25435718354 117.6791 117.0000 12.1696 278 7.7673
114 1 88.4685 0.4269 G 1.4878 208.4685 195.0000 63.8215 113 11.9948348999023 140.116447999497 119.7296 120.0000 13.4110 241 0.4269
116 1 522.4135 2.5206 G 4.5146 644.4135 509.0000 430.9915 135 13.1105813980103 142.741314793401 123.7558 122.0000 13.8275 315 2.5206
117 1 124.4685 0.6006 G 1.6935 250.4685 251.0000 72.0371 113 11.9948348999023 147.90385990101 128.3160 126.0000 14.6026 220 0.6006
118 1 7.3750 L 0.8756 138.3750 135.0000 17.8072 88 10.5851345062256 158.040970683333 134.4424 131.0000 18.0273 225 0.0356
119 1 0.3750 L 0.8306 131.3750 129.0000 17.2130 114 12.0477924346924 158.162762409919 133.4941 131.0000 18.1085 263 0.0018
120 1 226.5439 1.0931 G 2.3811 349.5439 332.0000 141.6432 116 12.1530151367188 146.801819626076 125.4011 123.0000 15.8679 188 1.0931
121 1 7.1607 L 0.8880 128.1607 126.0000 16.7404 114 12.0477924346924 144.319079807337 123.2218 121.0000 15.5461 294 0.0345
123 1 31.7143 0.1530 G 1.0344 165.7143 159.0000 36.5971 98 11.1703834533691 160.205374560494 135.3889 134.0000 17.4703 224 0.1530
124 1 84.4158 0.4073 G 1.3991 209.4158 188.0000 74.3607 103 11.4517974853516 149.679256956026 127.3333 125.0000 16.4528 236 0.4073
125 1 134.9327 0.6510 G 1.6918 263.9327 231.0000 107.9140 106 11.617374420166 156.011220546998 130.7696 129.0000 18.0075 225 0.6510
126 1 -1.2157 L 0.8116 143.7843 141.0000 19.8547 51 8.0582389831543 177.15782626816 147.6311 145.0000 21.4386 214 -0.0059
127 1 9.1932 L 0.8709 144.1932 144.0000 23.4501 88 10.5851345062256 165.574911701505 137.0174 135.0000 20.3833 238 0.0444
128 1 454.1909 2.1914 G 3.1980 594.1909 552.0000 364.6552 112 11.9416427612305 185.798947733096 145.9079 140.0000 30.5326 236 2.1914
130 1 532.2778 C 3.5725 690.2778 567.0000 363.7567 146 13.6342573165894 193.217540967973 160.4593 158.0000 23.4784 280 2.5682
131 1 151.7394 C 1.5996 310.7394 287.0000 127.0475 144 13.5405502319336 194.262400284507 161.8017 159.0000 23.5083 252 0.7321

Total number of rows: 20469

Table truncated, full table size 2671 Kbytes.




Supplementary data files not provided
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