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Sample GSM102327 Query DataSets for GSM102327
Status Public on Mar 28, 2007
Title 1257-2
Sample type RNA
 
Source name biopsy
Organism Homo sapiens
Characteristics squamous cell cartinoma of oral tongue, male
Extracted molecule total RNA
Extraction protocol ISOGEN(Wako pure chemical)+RNeasy(QIAGEN)
Label biotin
Label protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270813678-B500%29?OpenDocument&hometitle=WebDocs
 
Hybridization protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270810969-B500%29?OpenDocument&hometitle=WebDocs
Scan protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3AScanning+CodeLi%28248345081-B500%29?OpenDocument&hometitle=WebDocs
Description Biopsy sample
Data processing CodeLink Expression Analysis version 4.1
 
Submission date Mar 29, 2006
Last update date Apr 27, 2006
Contact name Hiroshi Watanabe
E-mail(s) hiro.orad@tmd.ac.jp
Phone +81-43-206-4048
Organization name National institute of radiological sceiences
Street address Anagawa 4-9-1
City Inage-ku
State/province Chiba-shi
ZIP/Postal code 263+8555
Country Japan
 
Platform ID GPL2891
Series (1)
GSE4676 Gene expression profiles of oral tongue squamous cell carcinoma tissues.

Data table header descriptions
ID_REF CodeLink Feature_id
Array Logical array
Raw_intensity Raw signal intensity value
VALUE same as UNF_VALUE but with flagged values removed
Quality_flag CodeLink quality flag
Signal_strength Signal strength
Spot_mean Spot median
Spot_median Spot median
Spot_stdev Spot standard deviation
Spot_area Spot area
Spot_diameter Spot diameter
Spot_noise_level Spot noise level
Bkgd_mean Background mean
Bkgd_median Background median
Bkgd_stdev Background standard deviation
Bkgd_area Background area
UNF_VALUE Median normalized signal intensity value

Data table
ID_REF Array Raw_intensity VALUE Quality_flag Signal_strength Spot_mean Spot_median Spot_stdev Spot_area Spot_diameter Spot_noise_level Bkgd_mean Bkgd_median Bkgd_stdev Bkgd_area UNF_VALUE
109 1 56.8583 0.3855 G 1.2577 155.8583 140.0000 40.7251 129 12.8159236907959 123.922892649764 101.4124 99.0000 16.6153 284 0.3855
110 1 145.0165 0.9833 G 1.7300 248.0165 221.0000 121.1701 123 12.5143299102783 143.365787196791 109.1795 103.0000 26.9105 283 0.9833
111 1 264.3103 1.7922 G 2.8254 365.3103 330.0000 209.8383 118 12.2573356628418 129.293912407155 104.8884 101.0000 18.8626 214 1.7922
112 1 444.1136 3.0114 G 4.2966 545.1136 442.0000 374.3969 134 13.0619335174561 126.871429034376 104.8667 101.0000 17.2476 265 3.0114
113 1 731.1288 4.9576 G 6.6551 832.1288 684.0000 585.3344 134 13.0619335174561 125.036849281599 102.5423 101.0000 16.0246 270 4.9576
114 1 41.9510 0.2845 G 1.0958 143.9510 140.0000 30.2397 104 11.5072546005249 131.365095617455 105.4249 102.0000 19.5767 241 0.2845
116 1 266.2870 1.8056 G 2.8889 370.2870 301.0000 210.7974 110 11.8345403671265 128.175780556884 106.0687 104.0000 16.1172 241 1.8056
117 1 68.1837 0.4623 G 1.2240 172.1837 167.0000 41.4060 98 11.1703834533691 140.677319998099 108.9630 104.0000 24.4515 224 0.4623
118 1 21.8936 L 0.9671 126.8936 120.0000 38.1686 94 10.9400415420532 131.209619122475 107.8621 105.0000 17.4731 240 0.1485
119 1 12.5323 L 0.9540 113.5323 108.0000 23.3132 126 12.6660251617432 119.005644716436 103.3333 101.0000 12.0038 283 0.0850
120 1 139.9223 0.9488 G 1.9825 241.9223 233.0000 81.6879 105 11.562445640564 122.028613885956 102.9787 102.0000 13.3524 194 0.9488
121 1 4.3962 L 0.8649 107.3962 106.0000 16.2647 53 8.21472454071045 124.173356322763 105.8095 103.0000 14.1156 218 0.0298
123 1 41.2574 0.2798 G 1.1819 142.2574 140.0000 36.1421 103 11.4517974853516 120.362523693682 101.5595 101.0000 12.9083 235 0.2798
124 1 67.0303 0.4545 G 1.3561 169.0303 157.0000 49.3795 99 11.2272310256958 124.64658636727 104.3522 102.0000 15.0977 238 0.4545
125 1 121.7100 0.8253 G 1.5047 222.7100 220.0000 91.2712 102 11.396071434021 148.013942043577 106.7696 101.0000 31.3426 238 0.8253
126 1 5.4336 L 0.8117 104.4336 103.0000 11.3721 115 12.1005182266235 128.656236495856 102.8370 99.0000 19.7708 235 0.0368
127 1 13.9652 L 0.8175 114.9652 111.0000 20.1718 117 12.2052869796753 140.637127077205 107.4163 101.0000 26.4248 255 0.0947
128 1 199.0901 1.3500 G 2.2614 301.0901 273.0000 163.1012 113 11.9948348999023 133.141751529556 106.2069 102.0000 20.7612 240 1.3500
130 1 312.5555 2.1194 G 3.2569 414.5555 369.0000 192.8020 110 11.8345403671265 127.283811899779 104.5025 102.0000 16.8559 209 2.1194
131 1 94.1732 0.6386 G 1.4958 197.1732 187.0000 72.0592 129 12.8159236907959 131.818425326661 106.6891 103.0000 19.2123 324 0.6386

Total number of rows: 20469

Table truncated, full table size 2627 Kbytes.




Supplementary data files not provided
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