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Sample GSM102336 Query DataSets for GSM102336
Status Public on Mar 28, 2007
Title 1473-1
Sample type RNA
 
Source name biopsy
Organism Homo sapiens
Characteristics sample no.: 1473
age: 73
Sex: M
primary site: Tongue
pathological diagnosis: squamous cell carcinoma
t stage: T2
n status: N0
metastasis-free survival (m): 40
analytical group: Reference
Extracted molecule total RNA
Extraction protocol ISOGEN(Wako pure chemical)+RNeasy(QIAGEN)
Label biotin
Label protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270813678-B500%29?OpenDocument&hometitle=WebDocs
 
Hybridization protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270810969-B500%29?OpenDocument&hometitle=WebDocs
Scan protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3AScanning+CodeLi%28248345081-B500%29?OpenDocument&hometitle=WebDocs
Description Biopsy sample
Data processing CodeLink Expression Analysis version 4.1
 
Submission date Mar 29, 2006
Last update date Dec 23, 2014
Contact name Hiroshi Watanabe
E-mail(s) hiro.orad@tmd.ac.jp
Phone +81-43-206-4048
Organization name National institute of radiological sceiences
Street address Anagawa 4-9-1
City Inage-ku
State/province Chiba-shi
ZIP/Postal code 263+8555
Country Japan
 
Platform ID GPL2891
Series (1)
GSE4676 Gene expression profiles of oral tongue squamous cell carcinoma tissues.

Data table header descriptions
ID_REF CodeLink Feature_id
Array Logical array
Raw_intensity Raw signal intensity value
VALUE same as UNF_VALUE but with flagged values removed
Quality_flag CodeLink quality flag
Signal_strength Signal strength
Spot_mean Spot median
Spot_median Spot median
Spot_stdev Spot standard deviation
Spot_area Spot area
Spot_diameter Spot diameter
Spot_noise_level Spot noise level
Bkgd_mean Background mean
Bkgd_median Background median
Bkgd_stdev Background standard deviation
Bkgd_area Background area
UNF_VALUE Median normalized signal intensity value

Data table
ID_REF Array Raw_intensity VALUE Quality_flag Signal_strength Spot_mean Spot_median Spot_stdev Spot_area Spot_diameter Spot_noise_level Bkgd_mean Bkgd_median Bkgd_stdev Bkgd_area UNF_VALUE
109 1 25.8630 0.4604 G 1.0871 120.8630 114.0000 25.9170 446 23.8299140930176 111.178562953625 95.9278 95.0000 10.7857 936 0.4604
110 1 81.4036 1.4491 G 1.5787 178.4036 145.0000 83.6294 513 25.5572280883789 113.009056988803 97.6944 97.0000 10.6727 1063 1.4491
111 1 35.2346 0.6272 G 1.1709 129.2346 125.0000 29.8595 494 25.0794811248779 110.373831634877 95.0654 94.0000 10.9159 1145 0.6272
112 1 123.7319 2.2025 G 1.9749 218.7319 174.0000 119.4086 521 25.7557334899902 110.753544813732 95.0154 95.0000 10.5024 1148 2.2025
113 1 501.1612 8.9211 G 5.4280 595.1612 542.0000 383.5154 556 26.6067886352539 109.645497298928 94.9200 94.0000 10.4303 1144 8.9211
114 1 36.5389 0.6504 G 1.1858 130.5389 118.0000 37.5570 496 25.1301975250244 110.086246155919 94.8517 94.0000 10.7242 1192 0.6504
116 1 35.1946 0.6265 G 1.1766 129.1946 120.0000 35.4657 486 24.8755779266357 109.804672037129 94.3566 94.0000 10.5364 1151 0.6265
117 1 25.3185 0.4507 G 1.0894 119.3185 116.0000 22.9425 435 23.5342140197754 109.528084817074 94.4493 94.0000 10.3521 984 0.4507
118 1 3.1331 L 0.8895 98.1331 98.0000 11.9448 267 18.4378681182861 110.319679976414 95.1895 95.0000 10.2131 795 0.0558
119 1 1.9313 L 0.8749 96.9313 97.0000 11.0279 326 20.3734169006348 110.79299582175 95.8814 95.0000 10.5287 860 0.0344
120 1 18.9007 0.3364 G 1.0233 113.9007 112.0000 17.1866 411 22.8757839202881 111.310154976077 96.0929 95.0000 10.8734 974 0.3364
121 1 0.0846 L 0.8638 96.0846 96.0000 11.4644 325 20.3421440124512 111.235745915395 95.9216 96.0000 10.1572 903 0.0015
123 1 10.9690 L 0.9521 104.9690 104.0000 15.0532 427 23.3168029785156 110.248179101297 94.8792 94.0000 10.8321 1033 0.1953
124 1 74.2211 1.3212 G 1.5298 169.2211 153.0000 65.7014 406 22.7362098693848 110.614585253009 96.1718 95.0000 10.4097 775 1.3212
125 1 26.2833 0.4679 G 1.0941 120.2833 117.0000 22.7440 421 23.1524047851563 109.937926291503 94.8124 94.0000 10.6253 976 0.4679
126 1 6.8081 L 0.9242 100.8081 100.0000 13.3885 404 22.6801414489746 109.080317339762 94.4261 94.0000 10.0535 1084 0.1212
127 1 5.4976 L 0.9100 101.4976 101.0000 11.7443 209 16.3127880096436 111.530917481162 95.9929 96.0000 10.3539 728 0.0979
128 1 81.6689 1.4538 G 1.5945 177.6689 154.0000 81.6772 446 23.8299140930176 111.424464149301 96.7015 96.0000 10.2830 996 1.4538
130 1 68.9685 1.2277 G 1.4683 166.9685 156.0000 49.0163 453 24.0161933898926 113.713100756678 98.1198 98.0000 10.4754 946 1.2277
131 1 53.6894 0.9557 G 1.3431 149.6894 141.0000 43.2058 509 25.4573936462402 111.449325163306 96.6628 96.0000 10.2996 1065 0.9557

Total number of rows: 20469

Table truncated, full table size 2623 Kbytes.




Supplementary data files not provided
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