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Sample GSM102342 Query DataSets for GSM102342
Status Public on Mar 28, 2007
Title 1477-1
Sample type RNA
 
Source name biopsy
Organism Homo sapiens
Characteristics sample no.: 1477
age: 46
Sex: F
primary site: Tongue
pathological diagnosis: squamous cell carcinoma
t stage: T2
n status: N0
metastasis-free survival (m): 35
analytical group: Validation
Extracted molecule total RNA
Extraction protocol ISOGEN(Wako pure chemical)+RNeasy(QIAGEN)
Label biotin
Label protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270813678-B500%29?OpenDocument&hometitle=WebDocs
 
Hybridization protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270810969-B500%29?OpenDocument&hometitle=WebDocs
Scan protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3AScanning+CodeLi%28248345081-B500%29?OpenDocument&hometitle=WebDocs
Description Biopsy sample
Data processing CodeLink Expression Analysis version 4.1
 
Submission date Mar 29, 2006
Last update date Dec 23, 2014
Contact name Hiroshi Watanabe
E-mail(s) hiro.orad@tmd.ac.jp
Phone +81-43-206-4048
Organization name National institute of radiological sceiences
Street address Anagawa 4-9-1
City Inage-ku
State/province Chiba-shi
ZIP/Postal code 263+8555
Country Japan
 
Platform ID GPL2891
Series (1)
GSE4676 Gene expression profiles of oral tongue squamous cell carcinoma tissues.

Data table header descriptions
ID_REF CodeLink Feature_id
Array Logical array
Raw_intensity Raw signal intensity value
VALUE same as UNF_VALUE but with flagged values removed
Quality_flag CodeLink quality flag
Signal_strength Signal strength
Spot_mean Spot median
Spot_median Spot median
Spot_stdev Spot standard deviation
Spot_area Spot area
Spot_diameter Spot diameter
Spot_noise_level Spot noise level
Bkgd_mean Background mean
Bkgd_median Background median
Bkgd_stdev Background standard deviation
Bkgd_area Background area
UNF_VALUE Median normalized signal intensity value

Data table
ID_REF Array Raw_intensity VALUE Quality_flag Signal_strength Spot_mean Spot_median Spot_stdev Spot_area Spot_diameter Spot_noise_level Bkgd_mean Bkgd_median Bkgd_stdev Bkgd_area UNF_VALUE
109 1 73.7356 0.5449 G 1.5324 172.7356 159.0000 49.1522 87 10.5248203277588 112.721703206024 99.5636 99.0000 9.1478 228 0.5449
110 1 317.4261 2.3456 G 3.7101 415.4261 431.0000 164.9426 117 12.2052869796753 111.970475764699 98.2174 98.0000 9.3136 238 2.3456
111 1 818.5250 6.0485 G 8.2728 915.5250 821.0000 638.3622 122 12.4633550643921 110.667174661026 96.8527 97.0000 9.1114 232 6.0485
112 1 991.2174 7.3246 G 9.6071 1091.2174 1044.0000 602.6127 117 12.2052869796753 113.584333677097 99.3547 100.0000 9.0562 242 7.3246
113 1 676.1803 4.9966 G 7.0349 772.1803 760.0000 410.0688 124 12.5650987625122 109.763768752989 96.1296 96.0000 9.1758 224 4.9966
114 1 98.4149 0.7272 G 1.7688 194.4149 194.0000 41.5127 94 10.9400415420532 109.915435349621 97.3486 96.0000 9.2770 226 0.7272
116 1 210.7018 1.5570 G 2.7145 309.7018 290.0000 128.4348 116 12.1530151367188 114.092261511609 98.9915 99.0000 10.0615 243 1.5570
117 1 90.2545 0.6669 G 1.6730 189.2545 190.0000 34.4047 112 11.9416427612305 113.125152123183 98.9342 99.0000 9.4168 236 0.6669
118 1 36.4679 0.2695 G 1.2004 134.4679 132.0000 18.8707 111 11.8882122039795 112.016581654439 98.9434 98.0000 9.3444 220 0.2695
119 1 1.8659 L 0.8819 98.8659 97.0000 9.0200 82 10.2179079055786 112.101003877829 97.6827 97.0000 10.0673 216 0.0138
120 1 879.2358 6.4971 G 8.9492 975.2358 925.0000 512.3239 125 12.6156625747681 108.974880047145 96.7414 96.0000 8.6499 240 6.4971
121 1 8.5795 L 0.9610 103.5795 103.0000 12.1559 88 10.5851345062256 107.782359537885 95.3745 95.0000 8.5216 243 0.0634
123 1 28.1299 0.2079 G 1.1377 125.1299 124.0000 20.4039 77 9.90148735046387 109.983953779441 97.4402 97.0000 8.6560 217 0.2079
124 1 98.9222 0.7310 G 1.7873 193.9222 194.0000 52.5400 90 10.7047443389893 108.499143772288 95.4676 95.0000 8.9994 224 0.7310
125 1 170.8081 1.2622 G 2.4319 266.8081 255.0000 113.2524 99 11.2272310256958 109.710142858823 96.0720 96.0000 9.1401 244 1.2622
126 1 16.8462 0.1245 G 1.0408 110.8462 110.0000 17.8172 65 9.09728336334229 106.503675275928 96.0318 94.0000 8.3358 228 0.1245
127 1 42.9806 0.3176 G 1.2769 136.9806 137.0000 16.7720 105 11.562445640564 107.278112396651 94.9559 94.0000 8.8521 235 0.3176
128 1 281.6190 2.0810 G 3.4808 377.6190 347.0000 187.4631 107 11.6720447540283 108.48554124614 95.5042 96.0000 8.3237 244 2.0810
130 1 320.4417 2.3679 G 3.7967 417.4417 399.0000 153.1321 122 12.4633550643921 109.949542873624 97.0000 97.0000 8.6330 231 2.3679
131 1 170.7705 1.2619 G 2.4429 266.7705 270.0000 64.0940 124 12.5650987625122 109.202482272791 96.7225 96.0000 8.8017 235 1.2619

Total number of rows: 20469

Table truncated, full table size 2611 Kbytes.




Supplementary data files not provided
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