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Sample GSM11714 Query DataSets for GSM11714
Status Public on Apr 16, 2004
Title ME16C, 12h, 0.06mM 5FU B
Sample type RNA
 
Channel 1
Source name pooled reference mRNA from 4 harvests of ME16C cells
Organism Homo sapiens
Extracted molecule total RNA
 
Channel 2
Source name mRNA from "ME16C, 12h, 0.06mM 5FU B"
Organism Homo sapiens
Extracted molecule total RNA
 
 
Description immortalized human mammary epithelial cell line treated with 0.06 mM of 5-Fluorouracil for 12 hours
Keywords = Breast Cancer, Chemotherapeutics, Gene expression, Microarray, Compugen
 
Submission date Oct 17, 2003
Last update date Jul 17, 2015
Contact name Charles M. Perou
E-mail(s) cperou@med.unc.edu
Organization name University of North Carolina at Chapel Hill
Department Professor of Genetics, and Pathology & Laboratory Medicine; Lineberger Comprehensive Cancer Center
Street address 12-044 Lineberger Comprehensive Cancer Center CB# 7295
City Chapel Hill
State/province NC
ZIP/Postal code 27599-7264
Country USA
 
Platform ID GPL550
Series (2)
GSE763 Cell-type specific responses to chemotherapeutics in breast cancer
GSE1647 Prediction of toxicant-specific gene expression signatures following chemotherapeutic treatment of breast cell lines

Data table header descriptions
ID_REF
VALUE same as UNF_VALUE but with flagged values removed
SPOT spot number on array
CH1_MEAN channel 1 mean intensity
CH1_SD standard deviation of channel 1 intensity
CH1_BKD_MEDIAN channel 1 background median intensity
CH1_BKD_SD standard deviation of channel 1 background median intensity
CH2_MEAN channel 2 mean intensity
CH2_SD standard deviation of channel 2 intensity
CH2_BKD_MEDIAN channel 2 background median intensity
CH2_BKD_SD standard deviation of channel 2 background median intensity
TOT_BPIX number of background pixels
TOT_SPIX number of spot pixels
CH2BN_MEDIAN channel 2 normalized background median intensity
CH2IN_MEAN channel 2 normalized mean intensity
CH1DL_MEAN channel 1 Lowess_normalized mean intensity
CH2DL_MEAN channel 2 Lowess_normalized mean intensity
LOG_RAT2N_MEAN log2_ratio of (CH2IN_MEAN - CH2BN_MEDIAN) over (CH1_MEAN - CH1_BKD_MEDIAN), CH2IN_MEAN and CH2BN_MEDIAN are global-normalized intensities
CORR correlation coefficient among pixels
FLAG Spot flag. 0:not flagged; negative:flagged as bad spots; positive:flagged as good spots
CONTROL Y: control gene; N: not control
UNF_VALUE LOG_RAT2L_MEAN; log2_ratio of CH2DL_MEAN over CH1DL_MEAN

Data table
ID_REF VALUE SPOT CH1_MEAN CH1_SD CH1_BKD_MEDIAN CH1_BKD_SD CH2_MEAN CH2_SD CH2_BKD_MEDIAN CH2_BKD_SD TOT_BPIX TOT_SPIX CH2BN_MEDIAN CH2IN_MEAN CH1DL_MEAN CH2DL_MEAN LOG_RAT2N_MEAN CORR FLAG CONTROL UNF_VALUE
1 1239 100 21 111 39 78 34 86 31 174 156 89 81 .03 0 N
2 6439 106 22 104 43 79 27 89 42 327 120 92 82 .03 0 N
3 11639 114 27 110 20 76 29 85 34 324 120 88 79 .07 0 N
4 16839 103 23 109 19 76 34 82 33 317 120 85 79 .12 0 N
5 1245 121 38 111 21 79 34 90 31 173 156 93 82 -1 0 N
6 6445 112 35 108 19 71 27 85 46 325 120 88 73 .05 0 N
7 1.202 11645 208 75 110 20 274 155 86 32 325 120 89 285 89 206 1 .72 0 N 1.202
8 1.116 16845 148 57 109 57 143 163 86 69 325 120 89 148 32 69 .597 .29 0 N 1.116
9 2539 88 20 92 28 67 29 68 33 325 120 70 69 .03 0 N
10 .623 7739 160 51 92 53 149 70 72 76 178 156 75 155 58 90 .234 .55 0 N .623
11 12939 96 22 93 29 70 29 70 73 177 156 72 72 -1 0 N
12 .838 18139 124 39 90 17 110 48 71 27 177 156 73 114 27 49 .27 .37 0 N .838
13 2545 85 21 87 23 65 29 71 31 327 120 73 67 .04 0 N
14 7745 81 22 88 19 65 27 65 30 178 156 67 67 -1 0 N
15 .59 12945 142 53 90 18 120 63 66 58 178 156 68 125 43 65 .132 .46 0 N .59
16 18145 96 26 88 17 67 29 70 31 177 156 72 69 .04 0 N
17 1240 128 52 108 18 142 198 83 30 169 156 86 147 16 74 1.609 .52 -100 N 2.216
18 6440 105 21 105 20 75 28 88 33 327 120 91 78 .03 0 N
19 .816 11640 2215 1800 108 21 4076 3513 86 35 324 120 89 4245 2185 3848 .98 .92 0 N .816
20 -2.852 16840 557 366 108 19 136 69 83 31 327 120 86 141 414 57 -3.035 .64 0 N -2.852

Total number of rows: 20163

Table truncated, full table size 1531 Kbytes.




Supplementary data files not provided
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