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Sample GSM11847 Query DataSets for GSM11847
Status Public on Apr 16, 2004
Title HME-CC, 24h, 0.01mM 5FU B
Sample type RNA
 
Channel 1
Source name pooled reference mRNA from 4 harvests of HME-CC cells
Organism Homo sapiens
Extracted molecule total RNA
 
Channel 2
Source name mRNA from "HME-CC, 24h, 0.01mM 5FU B"
Organism Homo sapiens
Extracted molecule total RNA
 
 
Description immortalized human mammary epithelial cell line treated with 0.01 mM of 5-Fluorouracil for 24 hours
Keywords = Breast Cancer, Chemotherapeutics, Gene expression, Microarray, Compugen
 
Submission date Oct 20, 2003
Last update date Jul 17, 2015
Contact name Charles M. Perou
E-mail(s) cperou@med.unc.edu
Organization name University of North Carolina at Chapel Hill
Department Professor of Genetics, and Pathology & Laboratory Medicine; Lineberger Comprehensive Cancer Center
Street address 12-044 Lineberger Comprehensive Cancer Center CB# 7295
City Chapel Hill
State/province NC
ZIP/Postal code 27599-7264
Country USA
 
Platform ID GPL550
Series (2)
GSE763 Cell-type specific responses to chemotherapeutics in breast cancer
GSE1647 Prediction of toxicant-specific gene expression signatures following chemotherapeutic treatment of breast cell lines

Data table header descriptions
ID_REF
VALUE same as UNF_VALUE but with flagged values removed
SPOT spot number on array
CH1_MEAN channel 1 mean intensity
CH1_SD standard deviation of channel 1 intensity
CH1_BKD_MEDIAN channel 1 background median intensity
CH1_BKD_SD standard deviation of channel 1 background median intensity
CH2_MEAN channel 2 mean intensity
CH2_SD standard deviation of channel 2 intensity
CH2_BKD_MEDIAN channel 2 background median intensity
CH2_BKD_SD standard deviation of channel 2 background median intensity
TOT_BPIX number of background pixels
TOT_SPIX number of spot pixels
CH2BN_MEDIAN channel 2 normalized background median intensity
CH2IN_MEAN channel 2 normalized mean intensity
CH1DL_MEAN channel 1 Lowess_normalized mean intensity
CH2DL_MEAN channel 2 Lowess_normalized mean intensity
LOG_RAT2N_MEAN log2_ratio of (CH2IN_MEAN - CH2BN_MEDIAN) over (CH1_MEAN - CH1_BKD_MEDIAN), CH2IN_MEAN and CH2BN_MEDIAN are global-normalized intensities
CORR correlation coefficient among pixels
FLAG Spot flag. 0:not flagged; negative:flagged as bad spots; positive:flagged as good spots
CONTROL Y: control gene; N: not control
UNF_VALUE LOG_RAT2L_MEAN; log2_ratio of CH2DL_MEAN over CH1DL_MEAN

Data table
ID_REF VALUE SPOT CH1_MEAN CH1_SD CH1_BKD_MEDIAN CH1_BKD_SD CH2_MEAN CH2_SD CH2_BKD_MEDIAN CH2_BKD_SD TOT_BPIX TOT_SPIX CH2BN_MEDIAN CH2IN_MEAN CH1DL_MEAN CH2DL_MEAN LOG_RAT2N_MEAN CORR FLAG CONTROL UNF_VALUE
1 -.568 4357 104 35 90 23 85 45 76 38 347 156 77 86 14 9 -.637 .13 0 N -.568
2 -.272 3253 102 33 88 22 90 41 79 38 347 156 80 91 14 11 -.347 .03 0 N -.272
3 -.801 4360 144 69 90 23 108 58 79 38 347 156 80 110 52 30 -.847 .23 0 N -.801
4 .291 3256 117 47 89 21 114 63 82 39 347 156 83 116 27 33 .238 .21 0 N .291
5 -.41 4363 151 62 90 23 120 62 77 40 347 156 78 122 59 44 -.472 .35 0 N -.41
6 -.305 3259 1590 1972 92 72 1276 1615 88 57 347 156 89 1302 1483 1200 -.304 .81 0 N -.305
7 .28 4366 149 67 98 29 140 82 82 42 347 156 83 142 49 60 .21 .44 0 N .28
8 -.239 3262 330 298 91 22 280 256 82 38 347 156 83 285 236 200 -.243 .74 0 N -.239
9 8773 86 25 88 22 76 37 72 39 179 208 73 77 -1 0 N
10 .211 7669 101 30 92 23 90 42 80 37 179 208 81 91 9 10 .152 .05 0 N .211
11 8776 87 24 87 24 76 37 77 45 179 208 78 77 -1 0 N
12 -.756 7672 107 33 91 24 91 44 82 41 179 208 83 92 16 9 -.831 .03 0 N -.756
13 8779 89 24 88 24 75 36 77 41 179 208 78 76 .09 0 N
14 7675 82 25 93 25 84 43 85 43 179 208 86 85 .12 0 N
15 .264 8782 147 64 91 23 140 91 77 40 179 208 78 142 54 65 .193 .5 0 N .264
16 7678 90 27 93 24 84 40 77 40 179 208 78 85 .07 0 N
17 -.543 13189 1629 1497 89 44 1115 1035 78 44 224 208 79 1137 1525 1047 -.542 .94 0 N -.543
18 .424 12085 100 29 89 22 89 44 75 36 179 208 76 90 11 14 .348 .08 0 N .424
19 -.412 13192 3845 3464 89 24 2798 2495 74 39 224 208 75 2855 3690 2773 -.434 .91 0 N -.412
20 -1.521 12088 230 158 90 22 126 65 80 39 179 208 81 128 136 47 -1.573 .41 0 N -1.521

Total number of rows: 20163

Table truncated, full table size 1617 Kbytes.




Supplementary data files not provided
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