|
| Status |
Public on Jun 15, 2015 |
| Title |
cutaneous primary melanoma PGEM503 |
| Sample type |
genomic |
| |
|
| Source name |
UNC
|
| Organism |
Homo sapiens |
| Characteristics |
site: Upper extremity
sample id: PGEM503
age: 36
gender: M
subtype: SSM
breslow thickness: 4.6
ulceration: present
mitoses: present
mitotic rate: 1.25
mutation: BRAF
tissue: cutaneous primary melanoma tumor
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
genomic DNA was extracted from FFPE tumor using a proteinase K digestion protocol
|
| Label |
Cy3, Cy5
|
| Label protocol |
Standard Illumina Protocol
|
| |
|
| Hybridization protocol |
bisulfite converted DNA was amplified, fragmented and hybridized to Illumina Cancer Panel I array using standard Illumina protocol
|
| Scan protocol |
Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
|
| Description |
FFPE
|
| Data processing |
BeadStudio software v3.2
|
| |
|
| Submission date |
Feb 03, 2014 |
| Last update date |
Jun 15, 2015 |
| Contact name |
Nathaniel Allen Slater |
| Organization name |
University of North Carolina School of Medicine
|
| Department |
Dermatology
|
| Lab |
Nancy Thomas
|
| Street address |
413 Mary Ellen Jones Building, 116 Manning Drive, CB#7287
|
| City |
Chapel Hill |
| State/province |
North Carolina |
| ZIP/Postal code |
27599 |
| Country |
USA |
| |
|
| Platform ID |
GPL9183 |
| Series (1) |
| GSE54623 |
DNA methylation profiles in primary cutaneous melanoma are associated with clinically significant pathologic features |
|
