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Sample GSM137314 Query DataSets for GSM137314
Status Public on Sep 28, 2006
Title LPS treatment (WT)
Sample type RNA
 
Channel 1
Source name LPS treatment rice cell
Organism Oryza sativa
Characteristics rice cell treated with LPS for 3hr
Extracted molecule total RNA
Label Cy3
 
Channel 2
Source name Non treatment rice cell
Organism Oryza sativa
Characteristics rice cell treated with DW for 3hr
Extracted molecule total RNA
Label Cy5
 
 
Description Rice suspension cultured cells (Oryza sativa L. cv. Nipponnbare) used for total RNA extraction were maintained using a modified N-6 medium and incubated on a rotary shaker at 25 C and 120 rpm in a dark. Cells were transferred to a fresh medium every week. Those cells 4 or 5 days after transfer to the new medium were used experiment.40mg of cultured rice cells were transferred to 1 ml of the fresh medium in a 2 ml centrifuge tube and pre-incubated for 30 min at 25 C on a thermomixer shaken at 750 rpm. N-acetylchitooctaose elicitor (100nM) was added to the culture medium and incubated for 3hr.Total RNA was extracted from rice cells by RNeasy Plant Mini Kit (QIAGEN Inc., Valencia, CA, USA).
Data processing log10 ratio (NormCH1/NormCH2)
 
Submission date Sep 25, 2006
Last update date Sep 26, 2006
Contact name Hanae Kaku
E-mail(s) kaku@isc.meiji.ac.jp
Phone +81-44-934-7805
Fax +81-44-934-7805
Organization name Meiji University
Department Life Sciences
Street address 1-1-1, Higashi-Mita, Tama-ku
City Kawasaki
State/province Kanagawa
ZIP/Postal code 214-8571
Country Japan
 
Platform ID GPL892
Series (1)
GSE5906 Bacterial lipopolysaccharides induce defense responses associated with Programmed cell death in rice cell

Data table header descriptions
ID_REF ID Ref
VALUE log10 ratio (NormCH1/NormCH2)
NormCH1
NormCH2

Data table
ID_REF VALUE NormCH1 NormCH2
1 1.268151278 4854.56 261.82
2 0.248347244 25.48 14.38
3 -0.614131554 27.76 114.19
4 0.357870086 36.99 16.22
5 -0.298746157 270.84 538.84
6 0.477589194 59.88 19.94
7 1.695129521 5165.36 104.22
8 -0.301165341 119.35 238.77
9 0.250955487 3062.26 1718.25
10 -0.472297023 25.87 76.75
11 -0.002578311 6090.08 6126.34
12 0.244579286 76.31 43.45
13 -0.12961462 84.93 114.47
14 1.694542009 5795.77 117.10
15 0.023731256 211.51 200.27
16 -0.187843996 29.28 45.12
17 -0.24170745 53.85 93.95
18 0.10828959 2836.23 2210.30
19 -0.283778031 88.56 170.21
20 0.531829291 11209.50 3294.25

Total number of rows: 22575

Table truncated, full table size 721 Kbytes.




Supplementary file Size Download File type/resource
GSM137314.txt.gz 5.1 Mb (ftp)(http) TXT

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