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Platform GPL892 Query DataSets for GPL892
Status Public on Jan 02, 2004
Title Agilent-012106 Rice Oligo Microarray G4138A (Feature Number version)
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Oryza sativa Japonica Group
Manufacturer Agilent Technologies
Manufacture protocol see manufacturer's web site at http://www.agilent.com/
Catalog number G4138A
 
Description
This array will enable researchers to simultaneously characterize thousands of rice genes associated with biological functions, growth processes, and biotic and abiotic stress response. Probes on this array are designed to selections from the extensive rice (japonica) cDNA library of Japans National Institute of Agrobiological Sciences.

Arrays of this design have barcodes that begin with 16012106 or 2512106.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.

*** A different version of this platform with the Agilent Probe names in the ID column is assigned accession number GPL7268.
 
Submission date Jan 02, 2004
Last update date Dec 06, 2012
Organization Agilent Technologies
E-mail(s) cag_sales-na@agilent.com
Phone 877-424-4536
URL http://www.agilent.com
Department
Street address
City Palo Alto
State/province CA
ZIP/Postal code 94304
Country USA
 
Samples (216) GSM99300, GSM99307, GSM99308, GSM99309, GSM99402, GSM99403 
Series (30)
GSE4409 Dissecting the rice genes responsible for long time changes of nitrogen supply forms and nitrogen starvation
GSE5286 Rice plants infected by Rice dwarf virus
GSE5853 Transcriptomic adaptations in rice suspension cells under sucrose starvation
Relations
Alternative to GPL7268

Data table header descriptions
ID Agilent feature number
COL Column
ROW Row
NAME Name
SPOT_ID Spot identifier
CONTROL_TYPE Control type
GB_ACC GenBankAccession
ACCESSION_STRING Accession String
DESCRIPTION Description

Data table
ID COL ROW NAME SPOT_ID CONTROL_TYPE GB_ACC ACCESSION_STRING DESCRIPTION
1 105 215 BrightCorner BrightCorner pos
2 105 214 NegativeControl NegativeControl neg
3 105 213 AK102367 A_71_P125991 FALSE AK102367 gb|AK102367 Nicotiana tabacum NtPDR1 mRNA for pleiotropic drug resistance like protein, complete cds.|PLN
4 105 212 AK111026 A_71_P108945 FALSE AK111026 gb|AK111026 Unknown expressed protein
5 105 211 AK105581 A_71_P121326 FALSE AK105581 gb|AK105581 Glycine max receptor-like protein kinase 1 (RLK1) mRNA, complete cds.|PLN
6 105 210 E1A_r60_n9 E1A_r60_n9 pos
7 105 209 Pro25G Pro25G pos
8 105 208 AK063576 A_71_P127110 FALSE AK063576 gb|AK063576 Arabidopsis thaliana mitochondrial chaperonin hsp60 (At3g23990) mRNA, complete cds.|PLN
9 105 207 AK067156 A_71_P106691 FALSE AK067156 gb|AK067156 Arabidopsis thaliana clone C103146 unknown protein (At4g13040) mRNA, complete cds.|PLN
10 105 206 AK064389 A_71_P105376 FALSE AK064389 gb|AK064389 Zea mays low molecular weight heat shock protein precursor (hsp22) mRNA, nuclear gene encoding mitochondrial protein, complete cds.|PLN
11 105 205 AK072154 A_71_P114922 FALSE AK072154 gb|AK072154 Arabidopsis thaliana At2g29670/T27A16.23 mRNA, complete cds.|PLN
12 105 204 AK100418 A_71_P111881 FALSE AK100418 gb|AK100418 Unknown expressed protein
13 105 203 AK111318 A_71_P118084 FALSE AK111318 gb|AK111318 Unknown expressed protein
14 105 202 Pro25G Pro25G pos
15 105 201 AK061207 A_71_P115350 FALSE AK061207 gb|AK061207 Arabidopsis thaliana unknown protein (At1g75170) mRNA, complete cds.|PLN
16 105 200 AK068804 A_71_P115554 FALSE AK068804 gb|AK068804 Arabidopsis thaliana Unknown protein (At5g52540) mRNA, complete cds.|PLN
17 105 199 AK068476 A_71_P122209 FALSE AK068476 gb|AK068476 Arabidopsis thaliana clone 11114 mRNA, complete sequence.|PLN
18 105 198 AK104152 A_71_P116328 FALSE AK104152 gb|AK104152 Oryza sativa (japonica cultivar-group) OsPBA1 mRNA for beta 1 subunit of 20S proteasome, complete cds.|PLN
19 105 197 AK058848 A_71_P110945 FALSE AK058848 gb|AK058848 Arabidopsis thaliana expressed protein (At1g08380) mRNA, complete cds.|PLN
20 105 196 AK100347 A_71_P110906 FALSE AK100347 gb|AK100347 Arabidopsis thaliana Unknown protein (At3g27390) mRNA, complete cds.|PLN

Total number of rows: 22575

Table truncated, full table size 2631 Kbytes.






Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp

Supplementary file Size Download File type/resource
GPL892_old_annotations.txt.gz 690.0 Kb (ftp)(http) TXT

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