NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM137315 Query DataSets for GSM137315
Status Public on Sep 28, 2006
Title LPS treatment (WT) color-swap
Sample type RNA
 
Channel 1
Source name Non treatment rice cell
Organism Oryza sativa
Characteristics ice cell treated with DW for 3hr
Extracted molecule total RNA
Label Cy3
 
Channel 2
Source name LPS treatment rice cell
Organism Oryza sativa
Characteristics rice cell treated with LPS for 3hr r
Extracted molecule total RNA
Label Cy5
 
 
Description Rice suspension cultured cells (Oryza sativa L. cv. Nipponnbare) used for total RNA extraction were maintained using a modified N-6 medium and incubated on a rotary shaker at 25 C and 120 rpm in a dark. Cells were transferred to a fresh medium every week. Those cells 4 or 5 days after transfer to the new medium were used experiment.40mg of cultured rice cells were transferred to 1 ml of the fresh medium in a 2 ml centrifuge tube and pre-incubated for 30 min at 25 C on a thermomixer shaken at 750 rpm. N-acetylchitooctaose elicitor (100nM) was added to the culture medium and incubated for 3hr.Total RNA was extracted from rice cells by RNeasy Plant Mini Kit (QIAGEN Inc., Valencia, CA, USA).
Data processing log10 ratio (NormCH2/NormCH1)
 
Submission date Sep 25, 2006
Last update date Sep 26, 2006
Contact name Hanae Kaku
E-mail(s) kaku@isc.meiji.ac.jp
Phone +81-44-934-7805
Fax +81-44-934-7805
Organization name Meiji University
Department Life Sciences
Street address 1-1-1, Higashi-Mita, Tama-ku
City Kawasaki
State/province Kanagawa
ZIP/Postal code 214-8571
Country Japan
 
Platform ID GPL892
Series (1)
GSE5906 Bacterial lipopolysaccharides induce defense responses associated with Programmed cell death in rice cell

Data table header descriptions
ID_REF ID Ref
VALUE log10 ratio (NormCH2/NormCH1)
Normch1
NormCh2

Data table
ID_REF VALUE Normch1 NormCh2
1 -1.61677 4600.79 111.19
2 -0.472097 60.02 20.24
3 -0.149682 47.05 33.34
4 0.0548689 20.96 23.78
5 -0.672072 437.30 93.05
6 -0.614472 81.93 19.91
7 -2.1258 4918.26 36.81
8 -0.106856 126.97 99.27
9 0.398595 880.55 2204.69
10 -0.36394 55.32 23.93
11 -0.126143 4599.21 3439.86
12 -0.835787 223.71 32.65
13 -0.0909428 66.27 53.75
14 -2.08023 4770.96 39.66
15 -0.109464 98.37 76.46
16 0.0273048 23.04 24.53
17 0.0991794 59.94 75.31
18 -0.0100782 1605.40 1568.58
19 0.0844236 32.46 39.42
20 0.60472 1837.14 7393.72

Total number of rows: 22575

Table truncated, full table size 658 Kbytes.




Supplementary file Size Download File type/resource
GSM137315.txt.gz 5.1 Mb (ftp)(http) TXT

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap