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Sample GSM137317 Query DataSets for GSM137317
Status Public on Sep 28, 2006
Title GN8treatment (WT) color-swap
Sample type RNA
 
Channel 1
Source name non treatment rice cell
Organism Oryza sativa
Characteristics rice cell treated with DW for 3hr
Extracted molecule total RNA
Label Cy3
 
Channel 2
Source name GN8 treatment rice cell
Organism Oryza sativa
Characteristics rice cell treated with GN8 for 3hr
Extracted molecule total RNA
Label Cy5
 
 
Description Rice suspension cultured cells (Oryza sativa L. cv. Nipponnbare) used for total RNA extraction were maintained using a modified N-6 medium and incubated on a rotary shaker at 25 C and 120 rpm in a dark. Cells were transferred to a fresh medium every week. Those cells 4 or 5 days after transfer to the new medium were used experiment.40mg of cultured rice cells were transferred to 1 ml of the fresh medium in a 2 ml centrifuge tube and pre-incubated for 30 min at 25 C on a thermomixer shaken at 750 rpm. N-acetylchitooctaose elicitor (100nM) was added to the culture medium and incubated for 3hr.Total RNA was extracted from rice cells by RNeasy Plant Mini Kit (QIAGEN Inc., Valencia, CA, USA).
Data processing log10 ratio (NormCH2/NormCH1)
 
Submission date Sep 25, 2006
Last update date Sep 26, 2006
Contact name Hanae Kaku
E-mail(s) kaku@isc.meiji.ac.jp
Phone +81-44-934-7805
Fax +81-44-934-7805
Organization name Meiji University
Department Life Sciences
Street address 1-1-1, Higashi-Mita, Tama-ku
City Kawasaki
State/province Kanagawa
ZIP/Postal code 214-8571
Country Japan
 
Platform ID GPL892
Series (1)
GSE5906 Bacterial lipopolysaccharides induce defense responses associated with Programmed cell death in rice cell

Data table header descriptions
ID_REF ID Ref
VALUE log10 ratio (NormCH2/NormCH1)
NormCH1
NormCH2

Data table
ID_REF VALUE NormCH1 NormCH2
1 -1.50359 3073.32 96.39
2 0.661872 9.24 42.41
3 0.878922 9.40 71.10
4 0.658376 8.95 40.75
5 -0.937146 353.64 40.87
6 -0.246326 47.19 26.76
7 -1.7613 2772.39 48.03
8 0.0901368 100.51 123.69
9 0.367847 853.52 1990.94
10 -0.186769 39.74 25.85
11 -0.171711 4497.34 3028.62
12 -0.799028 149.70 23.78
13 0.650775 20.39 91.22
14 -1.8377 3299.92 47.95
15 -0.0161875 101.66 97.94
16 0.503156 12.28 39.11
17 0.373731 63.21 149.46
18 0.0138463 1485.09 1533.20
19 -0.0593909 66.49 57.99
20 0.743332 1843.55 10209.08

Total number of rows: 22575

Table truncated, full table size 657 Kbytes.




Supplementary file Size Download File type/resource
GSM137317.txt.gz 5.0 Mb (ftp)(http) TXT

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