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Sample GSM1379511 Query DataSets for GSM1379511
Status Public on May 07, 2014
Title female pupae replicate 1 [miRNA]
Sample type RNA
 
Source name female Drosophila pupae
Organism Drosophila melanogaster
Characteristics Sex: female
developmental stage: pupae
Treatment protocol Flies laid in staggered vials and larvae, pupae and adults samples collected at the same time from vials at the right stage of development. 10 individuals included in each biological replicate collected.
Growth protocol LHm outbred population kept at 25oC
Extracted molecule total RNA
Extraction protocol ambion miRvana total RNA extraction kit used according to manufacturer's protocol
Label biotin
Label protocol Affymetrix One-Cycle Target Labeling (Expression Analysis Technical Manual, 2001, Affymetrix).
 
Hybridization protocol Affymetrix One-Cycle Target Labeling (Expression Analysis Technical Manual, 2001, Affymetrix).
Scan protocol Affymetrix One-Cycle Target Labeling (Expression Analysis Technical Manual, 2001, Affymetrix).
Description gene expression data from LHm outbred population
Data processing RMA standard
 
Submission date May 06, 2014
Last update date May 07, 2014
Contact name Fiona C Ingleby
Organization name University of Sussex
Department School of Biology
Street address John Maynard Smith Building
City Falmer
ZIP/Postal code BN1 9QG
Country United Kingdom
 
Platform ID GPL16384
Series (2)
GSE57321 Sex-specific mRNA and miRNA expression data from Drosophila larvae, pupae and adults [miRNA]
GSE57322 Sex-specific mRNA and miRNA expression data from Drosophila larvae, pupae and adults

Data table header descriptions
ID_REF
VALUE As provided by affy package, R 3.0.2, Bioconductor 2.2

Data table
ID_REF VALUE
dme-bantam-3p_st 6.256392436
dme-bantam-5p_st 2.608661927
dme-let-7-5p_st 12.98361653
dme-miR-10-3p_st 10.65470776
dme-miR-10-5p_st 6.979729274
dme-miR-100-3p_st 5.454866817
dme-miR-100-5p_st 10.59779903
dme-miR-1000-3p_st 4.939543108
dme-miR-1000-5p_st 6.178630111
dme-miR-1001-5p_st 1.49410325
dme-miR-1002-5p_st 1.583844724
dme-miR-1003-5p_st 2.326933839
dme-miR-1004-3p_st 4.661558376
dme-miR-1007-3p_st 0.817654096
dme-miR-1010-3p_st 6.445715336
dme-miR-1015-3p_st 2.376732926
dme-miR-1017-3p_st 6.55210407
dme-miR-11-5p_st 4.796295456
dme-miR-12-5p_st 8.487118391
dme-miR-124-3p_st 10.14435106

Total number of rows: 213

Table truncated, full table size 6 Kbytes.




Supplementary file Size Download File type/resource
GSM1379511_PF1.MI.CEL.gz 823.7 Kb (ftp)(http) CEL
Processed data included within Sample table

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