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Sample GSM139861 Query DataSets for GSM139861
Status Public on Oct 13, 2006
Title Testicular biopsy with Johnsen Score 2 #8
Sample type RNA
 
Source name Testicular biopsy with Johnsen Score 2 #8
Organism Homo sapiens
Characteristics Testicular biopsy with Johnsen Score 2 (Sertoli-Cell-Only syndrome)
Treatment protocol post-surgically immersed in RNALater (Ambion)
Extracted molecule total RNA
Extraction protocol RNAPure (Biozym) extraction of total RNA was performed according to the manufacturer's instructions. Total RNA was post-purified with RNeasy columns (Qiagen).
Label Biotin-11-UTP
Label protocol Biotinylated cRNA were prepared according to Codelink protocol 080074-00 Rev. AA
 
Hybridization protocol Following fragmentation, 10 microg of cRNA were hybridized for 16 hr at 37C according to Codelink protocol 080075-00 Rev. AA
Scan protocol Arrays were scanned on an Affymetrix 428 Array Scanner at PMT gain 70
Description Testicular sandwich biopsy from a patient with SCOS, categorized by Johnsen scoring
Data processing The data were analyzed with the Codelink expression software v4.1
 
Submission date Oct 12, 2006
Last update date Oct 12, 2006
Contact name Andrej-Nikolai Spiess
E-mail(s) a.spiess@uke.uni-hamburg.de
Phone +49-40-42803-1585
Fax +49-40-42803-1554
URL http://www.dr-spiess.de
Organization name University Hospital Hamburg-Eppendorf
Department Andrology
Lab Molecular Andrology
Street address Martinistr. 52
City 20246 Hamburg
State/province n/a
ZIP/Postal code n/a
Country Germany
 
Platform ID GPL2891
Series (1)
GSE6023 Expression data of testis biopsies obtained from men with spermatogenic impairment

Data table header descriptions
ID_REF
SIGNAL_RAW raw signal
BKD_RAW background signal
VALUE normalized signal

Data table
ID_REF SIGNAL_RAW BKD_RAW VALUE
109 92.2203 253.0816 0.2588
110 95.4683 227.7029 0.2679
111 573.3431 255.366 1.6089
112 1027.5597 256.3511 2.8835
113 2900.3235 266.687 8.1388
114 128.9831 233.4266 0.3619
116 290.0588 204.0892 0.814
117 479.3015 234.2676 1.345
118 75.1557 207.3708 0.2109
119 98 240.2973 0.275
120 126.4262 241.5409 0.3548
121 119.3462 223.5318 0.3349
123 95.0172 234.8529 0.2666
124 69.1591 248.9163 0.1941
125 1327.321 260.4612 3.7247
126 45.938 255.2735 0.1289
127 168.0079 257.3857 0.4715
128 1376.1858 267.9075 3.8618
130 691.881 253.3144 1.9415
131 414.8571 251.8939 1.1642

Total number of rows: 20469

Table truncated, full table size 606 Kbytes.




Supplementary file Size Download File type/resource
GSM139861.TXT.gz 2.0 Mb (ftp)(http) TXT

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