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Sample GSM139874 Query DataSets for GSM139874
Status Public on Oct 13, 2006
Title Testicular biopsy with Johnsen Score 5 #6
Sample type RNA
 
Source name Testicular biopsy with Johnsen Score 5 #6
Organism Homo sapiens
Characteristics Testicular biopsy with Johnsen Score 5 (pre/meiotic arrest)
Treatment protocol post-surgically immersed in RNALater (Ambion)
Extracted molecule total RNA
Extraction protocol RNAPure (Biozym) extraction of total RNA was performed according to the manufacturer's instructions. Total RNA was post-purified with RNeasy columns (Qiagen).
Label Biotin-11-UTP
Label protocol Biotinylated cRNA were prepared according to Codelink protocol 080074-00 Rev. AA
 
Hybridization protocol Following fragmentation, 10 microg of cRNA were hybridized for 16 hr at 37C according to Codelink protocol 080075-00 Rev. AA
Scan protocol Arrays were scanned on an Affymetrix 428 Array Scanner at PMT gain 70
Description Testicular sandwich biopsy from a patient with pre/meiotic arrest, categorized by Johnsen scoring
Data processing The data were analyzed with the Codelink expression software v4.1
 
Submission date Oct 12, 2006
Last update date Oct 12, 2006
Contact name Andrej-Nikolai Spiess
E-mail(s) a.spiess@uke.uni-hamburg.de
Phone +49-40-42803-1585
Fax +49-40-42803-1554
URL http://www.dr-spiess.de
Organization name University Hospital Hamburg-Eppendorf
Department Andrology
Lab Molecular Andrology
Street address Martinistr. 52
City 20246 Hamburg
State/province n/a
ZIP/Postal code n/a
Country Germany
 
Platform ID GPL2891
Series (1)
GSE6023 Expression data of testis biopsies obtained from men with spermatogenic impairment

Data table header descriptions
ID_REF
SIGNAL_RAW raw signal
BKD_RAW background signal
VALUE normalized signal

Data table
ID_REF SIGNAL_RAW BKD_RAW VALUE
109 102.9057 166.9955 0.2881
110 586.3762 165.0455 1.6418
111 165.9744 163.1461 0.4647
112 1187.0522 146.748 3.3237
113 2152.4966 157.6434 6.0269
114 125.0678 154.1656 0.3502
116 430.1439 156.8853 1.2044
117 316.2222 164.9571 0.8854
118 60.5192 164.7159 0.1695
119 132.157 158.6555 0.37
120 124.374 156.8105 0.3482
121 64 148.8941 0.1792
123 78.4068 148.2733 0.2195
124 7.3678 163.743 0.0206
125 394.1942 164.7089 1.1037
126 48.9639 153.5141 0.1371
127 123.866 154.1735 0.3468
128 1070.8203 160.9635 2.9983
130 570.2385 163.5811 1.5967
131 320 171.5992 0.896

Total number of rows: 20469

Table truncated, full table size 605 Kbytes.




Supplementary file Size Download File type/resource
GSM139874.TXT.gz 2.0 Mb (ftp)(http) TXT

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