|
Status |
Public on Nov 24, 2007 |
Title |
KSCR002 |
Sample type |
RNA |
|
|
Channel 1 |
Source name |
Constitutive_IR24_Replication2
|
Organism |
Oryza sativa Indica Group |
Characteristics |
Leaf samples from control plants of IR24
|
Treatment protocol |
No treatment
|
Growth protocol |
Plants were grown under Growth chambers and leaf samples were harvested on 14 DAS.
|
Extracted molecule |
total RNA |
Extraction protocol |
Qiagen Rneasy Plant Maxi Kit and according to manufacturers protocol.
|
Label |
Cy5
|
Label protocol |
Standard Protocol of Agilent Low RNA Input Fluorescent Linear Amplification Kit
|
|
|
Channel 2 |
Source name |
Constitutive_FR13A_Replication2
|
Organism |
Oryza sativa Indica Group |
Characteristics |
Leaf samples from control plants of FR13A
|
Treatment protocol |
No treatment
|
Growth protocol |
Plants were grown under Growth chambers and leaf samples were harvested on 14 DAS.
|
Extracted molecule |
total RNA |
Extraction protocol |
Qiagen Rneasy Plant Maxi Kit and according to manufacturers protocol.
|
Label |
Cy3
|
Label protocol |
Standard Protocol of Agilent Low RNA Input Fluorescent Linear Amplification Kit
|
|
|
|
Hybridization protocol |
Standard protocol of Gene Expression Hybridization Kit from Agilent Technologies.
|
Scan protocol |
Standard protocol of Agilent DNA Microarray Scanner
|
Description |
Keyword = rice Keyword = submergence stress response
|
Data processing |
Feature Extraction software Version 8.1 from Agilent Technologies
|
|
|
Submission date |
Nov 24, 2006 |
Last update date |
Nov 27, 2006 |
Contact name |
Kameswara Rao Kottapalli |
E-mail(s) |
Kottapallisri@gmail.com
|
Organization name |
USDA-ARS Lubbock & Texas Tech University
|
Department |
Plant & Soil Science
|
Lab |
Payton Lab
|
Street address |
3810 4th Street
|
City |
Lubbock |
State/province |
TX |
ZIP/Postal code |
79415 |
Country |
USA |
|
|
Platform ID |
GPL892 |
Series (1) |
GSE6362 |
Transcriptional profiling of indica rice cultivar FR13A under submergence treatment. |
|