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Sample GSM159911 Query DataSets for GSM159911
Status Public on Mar 01, 2007
Title A673 treated with Puromycin for 24 hours with concentration of 0.18 uM (2 x EC50), biological rep1
Sample type RNA
 
Source name A673 cell line, a human EWS/FLI translocated Ewing sarcoma cell line.
Organism Homo sapiens
Characteristics A673 cell line that has been treated with Puromycin for 24 hours with concentration of 0.18 uM (2 x EC50).
Growth protocol The Ewing sarcoma cell line A673 was grown in Dulbecco's Modified Eagle Media (DMEM) (Cellgro) with 10% Fetal calf serum (FCS) (Sigma Aldrich) and 2 mM sodium pyruvate (Cellgro) at 37C with 5% CO2.
Extracted molecule total RNA
Extraction protocol RNA was extracted with Trizol per the manufacturer's protocol (Invitrogen) and prepared for hybridization to Affymetrix high-throughput arrays.
Label biotin
Label protocol Two micrograms of RNA was used for target preparation as per the Affymetrix Gene Chip Automated Station (GCAS) protocol (Early Access User Manual Version 1.0).
 
Hybridization protocol 3.5 ug of cRNA was hybridized to Affymetrix 96-well Gene Chip HT human array with standard hybridization, blocking, washing, and staining per the Affymetrix Gene Chip Automated Station (GCAS) protocol (Early Access User Manual Version 1.0).
Scan protocol Scanned per the Affymetrix Gene Chip Automated Station (GCAS) protocol (Early Access User Manual Version 1.0).
Description Gene expression data from A673 cell line that has been treated with Puromycin for 24 hours with concentration of 0.18 uM (2 x EC50).
Data processing The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix's default analysis settings. The samples in the data set have been scaled so that the mean expression of all genes for each sample is equal to the mean expression of all genes for the median sample.
 
Submission date Feb 01, 2007
Last update date Feb 01, 2007
Contact name Kimberly Stegmaier
E-mail(s) Kimberly_Stegmaier@dfci.harvard.edu
Organization name Dana-Farber Cancer Institute and Children’s Hospital Boston, Harvard Medical School
Department Department of Pediatric Oncology
Street address 44 Binney Street
City Boston
State/province MA
ZIP/Postal code 02115
Country USA
 
Platform ID GPL4685
Series (1)
GSE6930 Expression data from A673 cell line treated with compounds at several doses and time points

Data table header descriptions
ID_REF Affymetrix probe set ID
VALUE MAS5 calculated signal intensity
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)

Data table
ID_REF VALUE ABS_CALL
1007_s_at 617.0054 P
1053_at 963.1687 P
117_at 8.289625 A
121_at 213.38638 P
1255_g_at 2.2867932 A
1294_at 26.869818 A
1316_at 59.8854 P
1320_at 14.149532 A
1405_i_at 26.726896 A
1431_at 14.721231 A
1438_at 233.2529 P
1487_at 254.97743 P
1494_f_at 52.45332 P
1598_g_at 5.00236 A
160020_at 116.05475 P
1729_at 43.73492 A
1773_at 29.156612 A
177_at 5.4311337 A
179_at 16.150476 A
1861_at 123.20097 P

Total number of rows: 22944

Table truncated, full table size 511 Kbytes.




Supplementary file Size Download File type/resource
GSM159911.CEL.gz 2.7 Mb (ftp)(http) CEL

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