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Platform GPL4685 Query DataSets for GPL4685
Status Public on Jan 05, 2007
Title [U133AAofAv2] Affymetrix GeneChip HT-HG_U133A Early Access Array
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Homo sapiens
Manufacturer Affymetrix
Manufacture protocol see manufacturer's web site
Support unknown
 
Description HT-HG_U133A (early access version) high-throughput array (Affy part number 520276)
 
Web link http://www.affymetrix.com/analysis/index.affx
Submission date Dec 20, 2006
Last update date Mar 28, 2013
Contact name Kenta Shibuya
Organization name Affymetrix Japan
Street address Shiba 4-1-23
City Minato-ku
State/province Tokyo
ZIP/Postal code 108-0014
Country Japan
 
Samples (873) GSM152018, GSM152019, GSM152020, GSM152021, GSM159850, GSM159851 
Series (17)
GSE6576 Prostate cancer cell line with slienceing of PDEF or control (GFP) gene using siRNA.
GSE6930 Expression data from A673 cell line treated with compounds at several doses and time points
GSE7378 Expression data from age-dichotomized ER+, N0 breast tumors

Data table header descriptions
ID
GB_LIST GenBank Accession Number
SPOT_ID
Species Scientific Name The genus and species of the organism represented by the probe set.
Annotation Date The date that the annotations for this probe array were last updated. It will generally be earlier than the date when the annotations were posted on the Affymetrix web site.
Sequence Type Indicates whether the sequence is an Exemplar, Consensus or Control sequence. An Exemplar is a single nucleotide sequence taken directly from a public database. This sequence could be an mRNA or EST. A Consensus sequence, is a nucleotide sequence assembled by Affymetrix, based on one or more sequence taken from a public database.
Representative Public ID The accession number of a representative sequence. Note that for consensus-based probe sets, the representative sequence is only one of several sequences (sequence sub-clusters) used to build the consensus sequence and it is not directly used to derive the probe sequences. The representative sequence is chosen during array design as a sequence that is best associated with the transcribed region being interrogated by the probe set. Refer to the Sequence Source field to determine the database used.
Gene Title Title of Gene represented by the probe set.
Gene Symbol A gene symbol, when one is available (from UniGene).
Entrez Gene Entrez Gene database UID
RefSeq Transcript ID References to multiple sequences in RefSeq. The field contains the ID and Description for each entry, and there can be multiple entries per ProbeSet.
Gene Ontology Biological Process Gene Ontology Consortium Biological Process derived from LocusLink. Each annotation consists of three parts: Accession Number // Description // Evidence. The description corresponds directly to the GO ID. The evidence can be direct, or extended.
Gene Ontology Cellular Component Gene Ontology Consortium Cellular Component derived from LocusLink. Each annotation consists of three parts: Accession Number // Description // Evidence. The description corresponds directly to the GO ID. The evidence can be direct, or extended.
Gene Ontology Molecular Function Gene Ontology Consortium Molecular Function derived from LocusLink. Each annotation consists of three parts: Accession Number // Description // Evidence. The description corresponds directly to the GO ID. The evidence can be direct, or extended.

Data table
ID GB_LIST SPOT_ID Species Scientific Name Annotation Date Sequence Type Representative Public ID Gene Title Gene Symbol Entrez Gene RefSeq Transcript ID Gene Ontology Biological Process Gene Ontology Cellular Component Gene Ontology Molecular Function
AFFX-DapX-3_at Control sequence Homo sapiens 18-Dec-05 Control sequence AFFX-DapX-3
AFFX-DapX-5_at Control sequence Homo sapiens 18-Dec-05 Control sequence AFFX-DapX-5
AFFX-DapX-M_at Control sequence Homo sapiens 18-Dec-05 Control sequence AFFX-DapX-M
AFFX-HSAC07/X00351_3_at Control sequence Homo sapiens 18-Dec-05 Control sequence AFFX-HSAC07/X00351_3 actin, beta ACTB 60 NM_001101 5856 // cytoskeleton // inferred from electronic annotation /// 5884 // actin filament // inferred from electronic annotation /// 35267 // TIP60 histone acetyltransferase complex // inferred from direct assay 166 // nucleotide binding // inferred from electronic annotation /// 3774 // motor activity // inferred from electronic annotation /// 5200 // structural constituent of cytoskeleton // inferred from electronic annotation /// 5515 // protein binding // inferred from electronic annotation /// 5515 // protein binding // inferred from physical interaction /// 5524 // ATP binding // inferred from electronic annotation /// 5198 // structural molecule activity // inferred from electronic annotation
AFFX-HSAC07/X00351_5_at Control sequence Homo sapiens 18-Dec-05 Control sequence AFFX-HSAC07/X00351_5 actin, beta ACTB 60 NM_001101 5856 // cytoskeleton // inferred from electronic annotation /// 5884 // actin filament // inferred from electronic annotation /// 35267 // TIP60 histone acetyltransferase complex // inferred from direct assay 166 // nucleotide binding // inferred from electronic annotation /// 3774 // motor activity // inferred from electronic annotation /// 5200 // structural constituent of cytoskeleton // inferred from electronic annotation /// 5515 // protein binding // inferred from electronic annotation /// 5515 // protein binding // inferred from physical interaction /// 5524 // ATP binding // inferred from electronic annotation /// 5198 // structural molecule activity // inferred from electronic annotation
AFFX-HSAC07/X00351_M_at Control sequence Homo sapiens 18-Dec-05 Control sequence AFFX-HSAC07/X00351_M actin, beta ACTB 60 NM_001101 5856 // cytoskeleton // inferred from electronic annotation /// 5884 // actin filament // inferred from electronic annotation /// 35267 // TIP60 histone acetyltransferase complex // inferred from direct assay 166 // nucleotide binding // inferred from electronic annotation /// 3774 // motor activity // inferred from electronic annotation /// 5200 // structural constituent of cytoskeleton // inferred from electronic annotation /// 5515 // protein binding // inferred from electronic annotation /// 5515 // protein binding // inferred from physical interaction /// 5524 // ATP binding // inferred from electronic annotation /// 5198 // structural molecule activity // inferred from electronic annotation
AFFX-HUMGAPDH/M33197_3_at Control sequence Homo sapiens 18-Dec-05 Control sequence AFFX-HUMGAPDH/M33197_3 glyceraldehyde-3-phosphate dehydrogenase GAPDH 2597 NM_002046 6006 // glucose metabolism // inferred from electronic annotation /// 6096 // glycolysis // non-traceable author statement /// 6096 // glycolysis // inferred from electronic annotation 5737 // cytoplasm // non-traceable author statement /// 5737 // cytoplasm // inferred from electronic annotation 4365 // glyceraldehyde-3-phosphate dehydrogenase (phosphorylating) activity // non-traceable author statement /// 16491 // oxidoreductase activity // inferred from electronic annotation /// 51287 // NAD binding // inferred from electronic annotation /// 4365 // glyceraldehyde-3-phosphate dehydrogenase (phosphorylating) activity // inferred from electronic annotation /// 8943 // glyceraldehyde-3-phosphate dehydrogenase activity // inferred from electronic annotation
AFFX-HUMGAPDH/M33197_5_at Control sequence Homo sapiens 18-Dec-05 Control sequence AFFX-HUMGAPDH/M33197_5 glyceraldehyde-3-phosphate dehydrogenase GAPDH 2597 NM_002046 6006 // glucose metabolism // inferred from electronic annotation /// 6096 // glycolysis // non-traceable author statement /// 6096 // glycolysis // inferred from electronic annotation 5737 // cytoplasm // non-traceable author statement /// 5737 // cytoplasm // inferred from electronic annotation 4365 // glyceraldehyde-3-phosphate dehydrogenase (phosphorylating) activity // non-traceable author statement /// 16491 // oxidoreductase activity // inferred from electronic annotation /// 51287 // NAD binding // inferred from electronic annotation /// 4365 // glyceraldehyde-3-phosphate dehydrogenase (phosphorylating) activity // inferred from electronic annotation /// 8943 // glyceraldehyde-3-phosphate dehydrogenase activity // inferred from electronic annotation
AFFX-HUMGAPDH/M33197_M_at Control sequence Homo sapiens 18-Dec-05 Control sequence AFFX-HUMGAPDH/M33197_M glyceraldehyde-3-phosphate dehydrogenase GAPDH 2597 NM_002046 6006 // glucose metabolism // inferred from electronic annotation /// 6096 // glycolysis // non-traceable author statement /// 6096 // glycolysis // inferred from electronic annotation 5737 // cytoplasm // non-traceable author statement /// 5737 // cytoplasm // inferred from electronic annotation 4365 // glyceraldehyde-3-phosphate dehydrogenase (phosphorylating) activity // non-traceable author statement /// 16491 // oxidoreductase activity // inferred from electronic annotation /// 51287 // NAD binding // inferred from electronic annotation /// 4365 // glyceraldehyde-3-phosphate dehydrogenase (phosphorylating) activity // inferred from electronic annotation /// 8943 // glyceraldehyde-3-phosphate dehydrogenase activity // inferred from electronic annotation
AFFX-HUMISGF3A/M97935_3_at Control sequence Homo sapiens 18-Dec-05 Control sequence AFFX-HUMISGF3A/M97935_3 signal transducer and activator of transcription 1, 91kDa STAT1 6772 NM_007315 /// NM_139266 74 // regulation of progression through cell cycle // traceable author statement /// 6350 // transcription // inferred from electronic annotation /// 6355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 6366 // transcription from RNA polymerase II promoter // traceable author statement /// 6919 // caspase activation // traceable author statement /// 7242 // intracellular signaling cascade // inferred from electronic annotation /// 7249 // I-kappaB kinase/NF-kappaB cascade // traceable author statement /// 7260 // tyrosine phosphorylation of STAT protein // traceable author statement /// 7262 // STAT protein nuclear translocation // not recorded /// 9615 // response to virus // inferred from electronic annotation /// 7165 // signal transduction // inferred from electronic annotation /// 7165 // signal transduction // traceable author statement /// 7259 // JAK-STAT cascade // traceable author statement /// 9613 // response to pest, pathogen or parasite // traceable author statement 5634 // nucleus // traceable author statement /// 5737 // cytoplasm // traceable author statement /// 5634 // nucleus // inferred from electronic annotation 3700 // transcription factor activity // traceable author statement /// 4871 // signal transducer activity // inferred from electronic annotation /// 5062 // hematopoietin/interferon-class (D200-domain) cytokine receptor signal transducer activity // traceable author statement /// 5509 // calcium ion binding // inferred from electronic annotation /// 5515 // protein binding // inferred from physical interaction /// 3677 // DNA binding // inferred from electronic annotation /// 3700 // transcription factor activity // inferred from electronic annotation /// 3677 // DNA binding // traceable author statement
AFFX-HUMISGF3A/M97935_5_at Control sequence Homo sapiens 18-Dec-05 Control sequence AFFX-HUMISGF3A/M97935_5 signal transducer and activator of transcription 1, 91kDa STAT1 6772 NM_007315 /// NM_139266 74 // regulation of progression through cell cycle // traceable author statement /// 6350 // transcription // inferred from electronic annotation /// 6355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 6366 // transcription from RNA polymerase II promoter // traceable author statement /// 6919 // caspase activation // traceable author statement /// 7242 // intracellular signaling cascade // inferred from electronic annotation /// 7249 // I-kappaB kinase/NF-kappaB cascade // traceable author statement /// 7260 // tyrosine phosphorylation of STAT protein // traceable author statement /// 7262 // STAT protein nuclear translocation // not recorded /// 9615 // response to virus // inferred from electronic annotation /// 7165 // signal transduction // inferred from electronic annotation /// 7165 // signal transduction // traceable author statement /// 7259 // JAK-STAT cascade // traceable author statement /// 9613 // response to pest, pathogen or parasite // traceable author statement 5634 // nucleus // traceable author statement /// 5737 // cytoplasm // traceable author statement /// 5634 // nucleus // inferred from electronic annotation 3700 // transcription factor activity // traceable author statement /// 4871 // signal transducer activity // inferred from electronic annotation /// 5062 // hematopoietin/interferon-class (D200-domain) cytokine receptor signal transducer activity // traceable author statement /// 5509 // calcium ion binding // inferred from electronic annotation /// 5515 // protein binding // inferred from physical interaction /// 3677 // DNA binding // inferred from electronic annotation /// 3700 // transcription factor activity // inferred from electronic annotation /// 3677 // DNA binding // traceable author statement
AFFX-HUMISGF3A/M97935_MA_at Control sequence Homo sapiens 18-Dec-05 Control sequence AFFX-HUMISGF3A/M97935_MA signal transducer and activator of transcription 1, 91kDa STAT1 6772 NM_007315 /// NM_139266 74 // regulation of progression through cell cycle // traceable author statement /// 6350 // transcription // inferred from electronic annotation /// 6355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 6366 // transcription from RNA polymerase II promoter // traceable author statement /// 6919 // caspase activation // traceable author statement /// 7242 // intracellular signaling cascade // inferred from electronic annotation /// 7249 // I-kappaB kinase/NF-kappaB cascade // traceable author statement /// 7260 // tyrosine phosphorylation of STAT protein // traceable author statement /// 7262 // STAT protein nuclear translocation // not recorded /// 9615 // response to virus // inferred from electronic annotation /// 7165 // signal transduction // inferred from electronic annotation /// 7165 // signal transduction // traceable author statement /// 7259 // JAK-STAT cascade // traceable author statement /// 9613 // response to pest, pathogen or parasite // traceable author statement 5634 // nucleus // traceable author statement /// 5737 // cytoplasm // traceable author statement /// 5634 // nucleus // inferred from electronic annotation 3700 // transcription factor activity // traceable author statement /// 4871 // signal transducer activity // inferred from electronic annotation /// 5062 // hematopoietin/interferon-class (D200-domain) cytokine receptor signal transducer activity // traceable author statement /// 5509 // calcium ion binding // inferred from electronic annotation /// 5515 // protein binding // inferred from physical interaction /// 3677 // DNA binding // inferred from electronic annotation /// 3700 // transcription factor activity // inferred from electronic annotation /// 3677 // DNA binding // traceable author statement
AFFX-HUMISGF3A/M97935_MB_at Control sequence Homo sapiens 18-Dec-05 Control sequence AFFX-HUMISGF3A/M97935_MB signal transducer and activator of transcription 1, 91kDa STAT1 6772 NM_007315 /// NM_139266 74 // regulation of progression through cell cycle // traceable author statement /// 6350 // transcription // inferred from electronic annotation /// 6355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 6366 // transcription from RNA polymerase II promoter // traceable author statement /// 6919 // caspase activation // traceable author statement /// 7242 // intracellular signaling cascade // inferred from electronic annotation /// 7249 // I-kappaB kinase/NF-kappaB cascade // traceable author statement /// 7260 // tyrosine phosphorylation of STAT protein // traceable author statement /// 7262 // STAT protein nuclear translocation // not recorded /// 9615 // response to virus // inferred from electronic annotation /// 7165 // signal transduction // inferred from electronic annotation /// 7165 // signal transduction // traceable author statement /// 7259 // JAK-STAT cascade // traceable author statement /// 9613 // response to pest, pathogen or parasite // traceable author statement 5634 // nucleus // traceable author statement /// 5737 // cytoplasm // traceable author statement /// 5634 // nucleus // inferred from electronic annotation 3700 // transcription factor activity // traceable author statement /// 4871 // signal transducer activity // inferred from electronic annotation /// 5062 // hematopoietin/interferon-class (D200-domain) cytokine receptor signal transducer activity // traceable author statement /// 5509 // calcium ion binding // inferred from electronic annotation /// 5515 // protein binding // inferred from physical interaction /// 3677 // DNA binding // inferred from electronic annotation /// 3700 // transcription factor activity // inferred from electronic annotation /// 3677 // DNA binding // traceable author statement
AFFX-HUMRGE/M10098_3_at Control sequence Homo sapiens 18-Dec-05 Control sequence AFFX-HUMRGE/M10098_3 signal recognition particle 68kDa SRP68 6730 NM_014230 5730 // nucleolus // traceable author statement /// 5783 // endoplasmic reticulum // traceable author statement /// 5786 // signal recognition particle (sensu Eukaryota) // traceable author statement /// 5840 // ribosome // traceable author statement /// 5634 // nucleus // inferred from electronic annotation /// 5786 // signal recognition particle (sensu Eukaryota) // inferred from electronic annotation /// 30529 // ribonucleoprotein complex // inferred from electronic annotation 3723 // RNA binding // inferred from electronic annotation /// 5047 // signal recognition particle binding // not recorded /// 5488 // binding // inferred from electronic annotation /// 3723 // RNA binding // not recorded
AFFX-HUMRGE/M10098_5_at Control sequence Homo sapiens 18-Dec-05 Control sequence AFFX-HUMRGE/M10098_5
AFFX-HUMRGE/M10098_M_at Control sequence Homo sapiens 18-Dec-05 Control sequence AFFX-HUMRGE/M10098_M
AFFX-LysX-3_at Control sequence Homo sapiens 18-Dec-05 Control sequence AFFX-LysX-3
AFFX-LysX-5_at Control sequence Homo sapiens 18-Dec-05 Control sequence AFFX-LysX-5
AFFX-LysX-M_at Control sequence Homo sapiens 18-Dec-05 Control sequence AFFX-LysX-M
AFFX-M27830_3_at Control sequence Homo sapiens 18-Dec-05 Control sequence AFFX-M27830_3

Total number of rows: 22944

Table truncated, full table size 15274 Kbytes.






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Supplementary file Size Download File type/resource
GPL4685.CDF.gz 7.1 Mb (ftp)(http) CDF

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