NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM1675211 Query DataSets for GSM1675211
Status Public on May 06, 2015
Title becic-00235: PN90: HG_U95C
Sample type RNA
 
Source name P90_prostate_cancer
Organism Homo sapiens
Characteristics Sex: male
age: --
diseasestate: Prostate_Adenocarcinoma
tumorgrading: Gleason_Score_7
diseasestaging: pT T3a, pN N0, pM MX
organismpart: Prostate
histology: ALI unknown, ECI focal, SVI no, SMI no
prostatetissue: adjacent normal
Biomaterial provider University of Pittsburgh, Department of Pathology
Extracted molecule total RNA
Extraction protocol See mage-tab files linked to series entry for additional details
Label biotin
Label protocol See mage-tab files linked to series entry for additional details
 
Hybridization protocol See mage-tab files linked to series entry for additional details
Scan protocol See mage-tab files linked to series entry for additional details
Data processing See mage-tab files linked to series entry for additional details
 
Submission date May 05, 2015
Last update date May 06, 2015
Contact name Mervi Heiskanen
E-mail(s) mervi.heiskanen@nih.gov
Phone 2402765175
Organization name NCI
Department CBIIT
Street address 9609 Medical Center Drive, 1W378
City Rockville
State/province MD
ZIP/Postal code 20850
Country USA
 
Platform ID GPL93
Series (1)
GSE68555 caArray_becic-00235: Gene expression alterations in prostate cancer predicting tumor aggression and preceding development of malignancy

Data table header descriptions
ID_REF
VALUE Signal
ABS_CALL indicating whether the transcript was present (P), absent (A), or marginal (M)
DETECTION P-VALUE

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-MurIL2_at 44.97 A 0.574038
AFFX-MurIL10_at 201.799 A 0.51489
AFFX-MurIL4_at 1.71763 A 0.574038
AFFX-MurFAS_at 9.90283 A 0.724854
AFFX-BioB-5_at 1988.38 P 0.000972149
AFFX-BioB-M_at 3095.87 P 7.00668e-05
AFFX-BioB-3_at 1347.12 P 0.00010954
AFFX-BioC-5_at 6444.34 P 7.00668e-05
AFFX-BioC-3_at 4770.03 P 5.16732e-05
AFFX-BioDn-5_at 4215.49 P 4.42873e-05
AFFX-BioDn-3_at 26467.2 P 4.42873e-05
AFFX-CreX-5_at 50530.2 P 4.42873e-05
AFFX-CreX-3_at 77120.3 P 4.42873e-05
AFFX-BioB-5_st 45.6564 A 0.52976
AFFX-BioB-M_st 175.987 A 0.559354
AFFX-BioB-3_st 71.7206 A 0.804734
AFFX-BioC-5_st 48.5231 A 0.910522
AFFX-BioC-3_st 49.0074 A 0.804734
AFFX-BioDn-5_st 363.276 A 0.147939
AFFX-BioDn-3_st 569.702 P 0.0125468

Total number of rows: 12646

Table truncated, full table size 352 Kbytes.




Supplementary file Size Download File type/resource
GSM1675211_PN90_u95c.CEL.gz 2.6 Mb (ftp)(http) CEL
GSM1675211_PN90_u95cmas5.CHP.gz 4.7 Mb (ftp)(http) CHP
GSM1675211_PN90_u95cmas5.CHP.txt.gz 129.0 Kb (ftp)(http) TXT
Processed data included within Sample table
Processed data provided as supplementary file

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap