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Sample GSM1675221 Query DataSets for GSM1675221
Status Public on May 06, 2015
Title becic-00235: PN94: HG_U95C
Sample type RNA
 
Source name P94_prostate_cancer
Organism Homo sapiens
Characteristics Sex: male
age: --
diseasestate: Prostate_Adenocarcinoma
tumorgrading: Gleason_Score_7
diseasestaging: pT T3a, pN N0, pM MX
organismpart: Prostate
histology: ALI no, ECI focal, SVI no, SMI no
prostatetissue: adjacent normal
Biomaterial provider University of Pittsburgh, Department of Pathology
Extracted molecule total RNA
Extraction protocol See mage-tab files linked to series entry for additional details
Label biotin
Label protocol See mage-tab files linked to series entry for additional details
 
Hybridization protocol See mage-tab files linked to series entry for additional details
Scan protocol See mage-tab files linked to series entry for additional details
Data processing See mage-tab files linked to series entry for additional details
 
Submission date May 05, 2015
Last update date May 06, 2015
Contact name Mervi Heiskanen
E-mail(s) mervi.heiskanen@nih.gov
Phone 2402765175
Organization name NCI
Department CBIIT
Street address 9609 Medical Center Drive, 1W378
City Rockville
State/province MD
ZIP/Postal code 20850
Country USA
 
Platform ID GPL93
Series (1)
GSE68555 caArray_becic-00235: Gene expression alterations in prostate cancer predicting tumor aggression and preceding development of malignancy

Data table header descriptions
ID_REF
VALUE Signal
ABS_CALL indicating whether the transcript was present (P), absent (A), or marginal (M)
DETECTION P-VALUE

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-MurIL2_at 47.4482 A 0.883887
AFFX-MurIL10_at 11.4398 A 0.824672
AFFX-MurIL4_at 67.8111 A 0.440646
AFFX-MurFAS_at 46.3267 A 0.659339
AFFX-BioB-5_at 2069.91 P 0.000753643
AFFX-BioB-M_at 3343.54 P 9.4506e-05
AFFX-BioB-3_at 1742.08 P 7.00668e-05
AFFX-BioC-5_at 6172.55 P 8.14279e-05
AFFX-BioC-3_at 5461.1 P 5.16732e-05
AFFX-BioDn-5_at 4871.33 P 4.42873e-05
AFFX-BioDn-3_at 25969.5 P 4.42873e-05
AFFX-CreX-5_at 56018.5 P 4.42873e-05
AFFX-CreX-3_at 77557.2 P 4.42873e-05
AFFX-BioB-5_st 24.7934 A 0.659339
AFFX-BioB-M_st 71.8888 A 0.737173
AFFX-BioB-3_st 40.6928 A 0.9273
AFFX-BioC-5_st 30.0437 A 0.9273
AFFX-BioC-3_st 19.1155 A 0.945787
AFFX-BioDn-5_st 284.167 A 0.227636
AFFX-BioDn-3_st 395.975 M 0.0542134

Total number of rows: 12646

Table truncated, full table size 351 Kbytes.




Supplementary file Size Download File type/resource
GSM1675221_PN94_u95c.CEL.gz 2.5 Mb (ftp)(http) CEL
GSM1675221_PN94_u95cmas5.CHP.gz 4.5 Mb (ftp)(http) CHP
GSM1675221_PN94_u95cmas5.CHP.txt.gz 129.0 Kb (ftp)(http) TXT
Processed data included within Sample table
Processed data provided as supplementary file

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