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Sample GSM1675252 Query DataSets for GSM1675252
Status Public on May 06, 2015
Title becic-00235: PT20: HG_U95C
Sample type RNA
 
Source name P20_prostate_cancer
Organism Homo sapiens
Characteristics Sex: male
age: --
diseasestate: Prostate_Adenocarcinoma
tumorgrading: Gleason_Score_7
diseasestaging: pT T3a, pN N0, pM MX
organismpart: Prostate
histology: ALI unknown, ECI yes, SVI no, SMI yes
prostatetissue: tumor
Biomaterial provider University of Pittsburgh, Department of Pathology
Extracted molecule total RNA
Extraction protocol See mage-tab files linked to series entry for additional details
Label biotin
Label protocol See mage-tab files linked to series entry for additional details
 
Hybridization protocol See mage-tab files linked to series entry for additional details
Scan protocol See mage-tab files linked to series entry for additional details
Data processing See mage-tab files linked to series entry for additional details
 
Submission date May 05, 2015
Last update date May 06, 2015
Contact name Mervi Heiskanen
E-mail(s) mervi.heiskanen@nih.gov
Phone 2402765175
Organization name NCI
Department CBIIT
Street address 9609 Medical Center Drive, 1W378
City Rockville
State/province MD
ZIP/Postal code 20850
Country USA
 
Platform ID GPL93
Series (1)
GSE68555 caArray_becic-00235: Gene expression alterations in prostate cancer predicting tumor aggression and preceding development of malignancy

Data table header descriptions
ID_REF
VALUE Signal
ABS_CALL indicating whether the transcript was present (P), absent (A), or marginal (M)
DETECTION P-VALUE

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-MurIL2_at 30.7141 A 0.891021
AFFX-MurIL10_at 30.3403 A 0.737173
AFFX-MurIL4_at 10.015 A 0.699394
AFFX-MurFAS_at 18.5315 A 0.712257
AFFX-BioB-5_at 1673.95 P 0.000856509
AFFX-BioB-M_at 3701.81 P 0.000195116
AFFX-BioB-3_at 1300.91 P 0.000258358
AFFX-BioC-5_at 4942.84 P 7.00668e-05
AFFX-BioC-3_at 4301.53 P 0.000581214
AFFX-BioDn-5_at 2900.18 P 5.16732e-05
AFFX-BioDn-3_at 20278.9 P 4.42873e-05
AFFX-CreX-5_at 47054.3 P 4.42873e-05
AFFX-CreX-3_at 63735 P 4.42873e-05
AFFX-BioB-5_st 346.59 A 0.175328
AFFX-BioB-M_st 230.713 A 0.39692
AFFX-BioB-3_st 220.103 A 0.455413
AFFX-BioC-5_st 43.1853 A 0.772364
AFFX-BioC-3_st 214.744 A 0.139482
AFFX-BioDn-5_st 612.052 A 0.116113
AFFX-BioDn-3_st 1705.55 P 0.000581214

Total number of rows: 12646

Table truncated, full table size 352 Kbytes.




Supplementary file Size Download File type/resource
GSM1675252_PT20_U95C.CEL.gz 2.6 Mb (ftp)(http) CEL
GSM1675252_PT20_U95Cmas5.0.CHP.gz 2.0 Mb (ftp)(http) CHP
GSM1675252_PT20_U95Cmas5.0.CHP.txt.gz 128.6 Kb (ftp)(http) TXT
Processed data included within Sample table
Processed data provided as supplementary file

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