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Sample GSM1675279 Query DataSets for GSM1675279
Status Public on May 06, 2015
Title becic-00235: PT43: HG_U95C
Sample type RNA
 
Source name P43_prostate_cancer
Organism Homo sapiens
Characteristics Sex: male
age: --
diseasestate: Prostate_Adenocarcinoma
tumorgrading: Gleason_Score_7
diseasestaging: pT T3a, pN N0, pM MX
organismpart: Prostate
histology: ALI no, ECI yes, SVI no, SMI yes
prostatetissue: tumor
Biomaterial provider University of Pittsburgh, Department of Pathology
Extracted molecule total RNA
Extraction protocol See mage-tab files linked to series entry for additional details
Label biotin
Label protocol See mage-tab files linked to series entry for additional details
 
Hybridization protocol See mage-tab files linked to series entry for additional details
Scan protocol See mage-tab files linked to series entry for additional details
Data processing See mage-tab files linked to series entry for additional details
 
Submission date May 05, 2015
Last update date May 06, 2015
Contact name Mervi Heiskanen
E-mail(s) mervi.heiskanen@nih.gov
Phone 2402765175
Organization name NCI
Department CBIIT
Street address 9609 Medical Center Drive, 1W378
City Rockville
State/province MD
ZIP/Postal code 20850
Country USA
 
Platform ID GPL93
Series (1)
GSE68555 caArray_becic-00235: Gene expression alterations in prostate cancer predicting tumor aggression and preceding development of malignancy

Data table header descriptions
ID_REF
VALUE Signal
ABS_CALL indicating whether the transcript was present (P), absent (A), or marginal (M)
DETECTION P-VALUE

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-MurIL2_at 48.5493 A 0.973889
AFFX-MurIL10_at 102.577 A 0.724871
AFFX-MurIL4_at 176.125 A 0.712257
AFFX-MurFAS_at 317.746 A 0.544587
AFFX-BioB-5_at 2885.63 P 0.000445901
AFFX-BioB-M_at 4989.02 P 0.000169227
AFFX-BioB-3_at 2785.44 P 0.000126798
AFFX-BioC-5_at 5212.4 P 7.00668e-05
AFFX-BioC-3_at 3407.57 P 4.42873e-05
AFFX-BioDn-5_at 4081.05 P 7.00668e-05
AFFX-BioDn-3_at 21090.6 P 5.16732e-05
AFFX-CreX-5_at 45968.1 P 4.42873e-05
AFFX-CreX-3_at 59916.6 P 5.16732e-05
AFFX-BioB-5_st 531.969 A 0.300606
AFFX-BioB-M_st 103.982 A 0.712257
AFFX-BioB-3_st 106.289 A 0.455413
AFFX-BioC-5_st 66.6393 A 0.932322
AFFX-BioC-3_st 49.3275 A 0.843268
AFFX-BioDn-5_st 854.696 P 0.0284573
AFFX-BioDn-3_st 869.555 P 0.0182806

Total number of rows: 12646

Table truncated, full table size 348 Kbytes.




Supplementary file Size Download File type/resource
GSM1675279_PT43_u95c.CEL.gz 2.2 Mb (ftp)(http) CEL
GSM1675279_PT43_u95cmas5.CHP.gz 4.0 Mb (ftp)(http) CHP
GSM1675279_PT43_u95cmas5.CHP.txt.gz 132.1 Kb (ftp)(http) TXT
Processed data included within Sample table
Processed data provided as supplementary file

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