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Sample GSM177499 Query DataSets for GSM177499
Status Public on Apr 02, 2007
Title breast tumor-b0317
Sample type RNA
 
Source name TISSUE_ID b0317
Organism Homo sapiens
Characteristics ER+
nodal_status: N0
DFS_years:11.45
age:73
Biomaterial provider Chew, K & Dairkee, SH
Extracted molecule total RNA
Extraction protocol Qiagen RNAesy purification from formaide extracted samples
Label biotin
Label protocol Affymetrix Gene Expression TP 21 (performed by HTArray Genomics Core Facility of Lawrence Berkeley National Laboratory)
 
Hybridization protocol Affymetrix Comm Hyb Setup 21 & Affymetrix Comm Wash Stain 21 (performed by HTArray Genomics Core Facility of Lawrence Berkeley National Laboratory)
Scan protocol GeneChip HT Scanner protocol v2.2.09 (performed by HTArray Genomics Core Facility of Lawrence Berkeley National Laboratory)
Description Gene expression data from ER+ N0 breast cancer from old cohort
Data processing RMA normalization with affy package in Bioconductor R
 
Submission date Mar 27, 2007
Last update date Apr 01, 2007
Contact name Christina Yau
E-mail(s) cyau@buckinstitute.org
Phone 415-209-2248
Organization name Buck Institute of Age Research
Lab Benz Lab
Street address 8001 Redwood Blvd
City Novato
State/province CA
ZIP/Postal code 94945
Country USA
 
Platform ID GPL4685
Series (1)
GSE7378 Expression data from age-dichotomized ER+, N0 breast tumors

Data table header descriptions
ID_REF
VALUE RMA normalized log2 probe set intensity

Data table
ID_REF VALUE
1007_s_at 11.13112357
1053_at 7.935582314
117_at 6.707822172
121_at 6.786886779
1255_g_at 4.53655328
1294_at 7.794484464
1316_at 5.563969958
1320_at 4.904594126
1405_i_at 7.378017845
1431_at 4.735078526
1438_at 6.207104924
1487_at 6.737934214
1494_f_at 5.593018065
1598_g_at 11.02124581
160020_at 10.184655
1729_at 8.615794022
177_at 5.747128878
1773_at 5.349749678
179_at 7.028388308
1861_at 6.804605557

Total number of rows: 22944

Table truncated, full table size 517 Kbytes.




Supplementary file Size Download File type/resource
GSM177499.cel.gz 2.7 Mb (ftp)(http) CEL

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