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Sample GSM1826888 Query DataSets for GSM1826888
Status Public on Nov 16, 2015
Title gangliaw2_wildtype_rep6
Sample type RNA
 
Source name week 2 ganglia_wildtype
Organism Mus musculus
Characteristics age: 2 weeks
genotype/variation: wild type
tissue: superior cervical ganglia and coeliac ganglia
Growth protocol primary tissues were extracted from mice by surgical removal
Extracted molecule total RNA
Extraction protocol Total RNA was isolated using Rneasy kit (Qiagen)
Label CY3
Label protocol Cy3 labelling according to manufacturer's protocol (Agilent)
 
Hybridization protocol Hybridisation according to manufacturer's protocol (Agilent)
Scan protocol Scanned with Agilent scanner with standard settings.
Description wt w2_6
Data processing Data was normalized and processed using AgilentToGCT and LimmaGP modules in GenePattern
 
Submission date Jul 20, 2015
Last update date Nov 16, 2015
Contact name Daniel Carter
E-mail(s) dcarter@ccia.unsw.edu.au
Organization name Children's Cancer Institute
Street address Lowy Cancer Research Centre
City Randwick
ZIP/Postal code 2031
Country Australia
 
Platform ID GPL10787
Series (2)
GSE71062 Gene expression analysis of BE(2)C cells treated with SSRP1 and MYCN siRNAs
GSE71105 Gene expression analysis on ganglia derived from TH-MYCN mice

Data table header descriptions
ID_REF
VALUE log2 normalised AgilentToGCT output

Data table
ID_REF VALUE
A_55_P2033413 5.681576887
A_51_P260683 0.538111997
A_55_P2311591 0.814676743
A_55_P2121225 0.787828608
A_55_P2129614 8.481160469
A_55_P2029945 13.62555475
A_30_P01020999 0.599563459
A_30_P01020998 0.548700971
A_51_P244504 9.75836881
A_55_P2178006 5.997774279
A_30_P01020992 1.5330724
A_30_P01020991 1.72561771
A_55_P2319020 5.780316924
A_30_P01020997 0.857994527
A_30_P01020996 6.627804816
A_52_P730743 2.507835225
A_30_P01020994 5.42006767
A_30_P01022849 2.70966185
A_55_P1976127 6.517470979
A_30_P01029819 1.131312903

Total number of rows: 55821

Table truncated, full table size 1411 Kbytes.




Supplementary file Size Download File type/resource
GSM1826888_wt_w2_6.txt.gz 3.1 Mb (ftp)(http) TXT
Processed data included within Sample table

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