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Sample GSM244248 Query DataSets for GSM244248
Status Public on Dec 04, 2007
Title mcf373-3
Sample type RNA
 
Source name Human CELL LINE: MCF7 cells infected with miR-373
Organism Homo sapiens
Characteristics Human RNA
Extracted molecule total RNA
Extraction protocol total RNA
Label Illumina Label
Label protocol Illumina Label Protocol
 
Hybridization protocol Basic Illumina Hyb
Scan protocol Illumina Setting with PMTFactor=2
Description MCF7 cells were infected with miR-373
Data processing Illumina BeadStudio data on
1. The raw data of the spot density was extracted from Illumina BeadStudio software.
2. Check samples outlier.
3. The raw data filtering by the p-value 0.05 of each spot. If no one below p-value 0.05, the spot would be filtered out.
4. Quantile normalization for the filtering data.
5. Apply one-way ANOVA on the quantile normalization data to find out the significant gene data.
 
Submission date Nov 21, 2007
Last update date Aug 14, 2011
Contact name Louise C Showe
E-mail(s) lshowe@wistar.org
Phone 215-898-3791
Organization name The Wistar Institute
Lab Dr. Louise Showe
Street address 3601 Spruce St
City Philadelphia
State/province PA
ZIP/Postal code 19104
Country USA
 
Platform ID GPL6171
Series (1)
GSE9742 The microRNAs miR-373 and miR-520c promote tumor migration, invasion and metastasis

Data table header descriptions
ID_REF
VALUE Quantile normalization value

Data table
ID_REF VALUE
1 0.214209927
5 9.741658666
8 0.203946451
13 7.403560329
14 4.066594619
18 0.080893941
26 4.117760259
30 0.577124492
41 0.451443125
42 0.609680619
45 0.313906717
50 0.175137562
52 3.022247546
56 0.122261122
67 1.9966872
72 0.581429783
74 0.165300884
78 0.734712911
83 0.543386664
88 0.116047292

Total number of rows: 12547

Table truncated, full table size 217 Kbytes.




Supplementary file Size Download File type/resource
GSM244248.txt.gz 448.5 Kb (ftp)(http) TXT
Processed data included within Sample table
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