|
| Status |
Public on Jan 23, 2017 |
| Title |
OE_RBM_rep2 |
| Sample type |
SRA |
| |
|
| Source name |
Yeast
|
| Organism |
Schizosaccharomyces pombe |
| Characteristics |
genotype: RBM10 +/+
|
| Extracted molecule |
polyA RNA |
| Extraction protocol |
RNA libraries were prepared for sequencing using standard Illumina protocols
|
| |
|
| Library strategy |
RNA-Seq |
| Library source |
transcriptomic |
| Library selection |
cDNA |
| Instrument model |
Illumina HiSeq 2000 |
| |
|
| Data processing |
RNA-seq reads that pass the Illumina filter were aligned to the S. pombe genome reference sequences using TopHat with default mapping parameters
The raw read count for each gene was produced by HTSeq
DESeq package was used to identify the differentially expressed genes between rbm10Δ cells and WT
Genome_build: ASM294v2
Supplementary_files_format_and_content: tab-delimited text files include read cout for each Sample
|
| |
|
| Submission date |
Jan 22, 2017 |
| Last update date |
May 15, 2019 |
| Contact name |
QINGSONG GAO |
| E-mail(s) |
gaoqs313@gmail.com
|
| Organization name |
ST JUDE CHILDREN'S RESEARCH HOSPITAL
|
| Street address |
262 DANNY THOMAS PLACE
|
| City |
MEMPHIS |
| State/province |
Tennessee |
| ZIP/Postal code |
38105 |
| Country |
USA |
| |
|
| Platform ID |
GPL13988 |
| Series (1) |
| GSE93906 |
Rbm10 promotes heterochromatin assembly by interacting with Clr6 and chromatin remodeling complexes |
|
| Relations |
| BioSample |
SAMN06249265 |
| SRA |
SRX2510388 |
