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Sample GSM315554 Query DataSets for GSM315554
Status Public on Oct 01, 2008
Title AmphimedonEmb2
Sample type SRA
 
Source name mixed embryos
Organism Amphimedon queenslandica
Characteristics mixed embryos
Treatment protocol Stored at -80
Extracted molecule total RNA
Extraction protocol Trizol extracted whole RNA
 
Library strategy RNA-Seq
Library source transcriptomic
Library selection size fractionation
Instrument model Illumina Genome Analyzer
 
Description small RNA sequencing
15-30 nt size selection
Data processing The processed files are collapsed to unique sequences (1 line per sequence); the second (numeric) value in each column is the number of times each unique sequence was sequenced.
 
Submission date Aug 26, 2008
Last update date May 15, 2019
Contact name andrew grimson
Organization name Whitehead Institute
Lab Bartel
Street address 9 Cambridge Center
City Cambridge
State/province MA
ZIP/Postal code 02142
Country USA
 
Platform ID GPL9304
Series (1)
GSE12578 The Early Origins and Evolution of microRNAs and piRNAs in Animals
Relations
SRA SRX003105
BioSample SAMN02195203

Data table header descriptions
SEQUENCE sequence
COUNT counts

Data table
SEQUENCE COUNT
GCATTGATGGTTCAGTGGTAGAATTCTCGTCTTTTC 4847
GCATTGATGGTTCAGTGGTAGAATTCTCGTCTTTTA 4844
AGCGTGTAGGGATCCAAATCGTATGCCGCTCTTTGC 4573
TCCCATGTGGTCTAGTGGTTAGGATCCGGTGCTTCG 4056
GCATTGATGGTTCAGTGGTAGAATTCTCGTCTTTGT 3057
TCCGAAGTAGTATAGTGGTGAGTATCCCCTCCTTCG 2967
GCATTGATGGTTCAGTGGTAGAATTCTCGTCTCTTA 2760
GCATTGATGGTTCAGTGGTAGAATTCTCGTCTTTGC 2707
GCATTGATGGTTCAGTGGTAGAATTCTCGTCTTNTC 2543
TCCCATGTGGTCTAGTGGTTAGGATCCGGTGCTTTG 2388
GCATTGATGGTTCAGTGGTAGAATTCTCGTCTCTTC 2055
TCCCATGTGGTCTAGTGGTTAGGATCCGGTGCTTTC 2035
GCATTGATGGTTCAGTGGTAGAATTCTCGTCTTGTA 1946
GCATTGATGGTTCAGTGGTAGAATTCTCGTCTTNTA 1795
AGCGTGTAGGGATCCAAATCGTATGCCGCTCTCTGC 1788
GCATTGATGGTTCAGTGGTAGAATTCTCGTCTTTGA 1717
TCCCATGTGGTCTAGTGGTTAGGATCCGGTGCTTCA 1676
GCATTGATGGTTCAGTGGTAGAATTCTCGTCTTTTT 1669
GCATTGATGGTTCAGTGGTAGAATTCTCGTCTTGTC 1590
GCATTGATGGTTCAGTGGTAGAATTCTCGTCCTTTC 1539

Total number of rows: 3542176

Table truncated, full table size 134926 Kbytes.




Supplementary file Size Download File type/resource
GSM315554.txt.gz 34.1 Mb (ftp)(http) TXT
SRA Run SelectorHelp
Processed data included within Sample table
Processed data provided as supplementary file
Raw data are available in SRA
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