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Sample GSM33758

Query DataSets for GSM33758

Status

Public on Oct 28, 2004

Title

HCC006_Cy3

Sample type

RNA

Channel 1

Source name

Pooled Normal Liver

Organism

Extracted molecule

total RNA

Channel 2

Source name

HCC006

Organism

Extracted molecule

total RNA

Description

mAdb experiment ID: 44081

Array Print: Hs-OperonV2-vB1.1p12-060403
Tissue_type: Hepatocellular Carcinoma
Sample: HCC006
Sample_Description: subgroup A

Submission date

Oct 27, 2004

Last update date

May 27, 2005

Contact name

Snorri S Thorgeirsson

E-mail(s)

snorri_s_thorgeirsson@nih.gov

Phone

(301) 496-5688 x204

Fax

(301) 496-0734

URL

http://neoplasia.nci.nih.gov/

Organization name

National Cancer institute/NIH

Department

Laboratory of Experimental Carcinogenesis

Lab

Cellular and Molecular Biology Section

Street address

37 Convent Dr. # 4146

City

Bethesda

State/province

MD

ZIP/Postal code

20892

Country

USA

Platform ID

Series (1)

Human Hepatocellular Carcinoma study

Data table header descriptions
ID_REF	NCI mAdb well id plus replicate number
VALUE	log ratio (log2 of PRE_VALUE)
PRE_VALUE	Calibrated Ratio (Sample_target_source1 / Sample_target_source2 )
Slide_block	Array block location
Slide_column	Array column location
Slide_row	Array row location
CH1_MEAN	Sample 1 (Red Channel) mean Intensity
CH1_SD	Sample 1 (Red Channel) Standard Deviation
CH1_BKD_median	Sample 1 (Red Channel) median Background Level
CH1_BKD_SD	Sample 1 (Red Channel) Background Standard Deviation
CH2_MEAN	Sample 2 (Green Channel) mean Intensity
CH2_SD	Sample 2 (Green Channel) Standard Deviation
CH2_BKD_median	Sample 2 (Green Channel) median Background Level
CH2_BKD_SD	Sample 2 (Green Channel) Background Standard Deviation
Flag	Quality flag 0->good, -50->Not found, -100->Bad

Data table
ID_REF	VALUE	PRE_VALUE	Slide_block	Slide_column	Slide_row	CH1_MEAN	CH1_SD	CH1_BKD_median	CH1_BKD_SD	CH2_MEAN	CH2_SD	CH2_BKD_median	CH2_BKD_SD	Flag
1173588_1	-1.401	0.379	1	1	1	339	194	206	155	915	234	336	131	0
1174364_1	1.890	3.707	1	1	2	5930	1662	187	201	2874	865	321	135	0
1175152_1	-0.185	0.880	1	1	3	433	281	180	138	782	284	308	125	0
1175940_1	-0.174	0.886	1	1	4	651	281	187	155	1203	370	340	141	0
1176716_1	0.564	1.478	1	1	5	831	371	195	156	1054	464	345	187	0
1177504_1	1.000	2.000	1	1	6	982	326	192	143	1006	285	355	201	0
1178580_1	1.194	2.288	1	1	7	1776	564	178	227	1480	443	329	180	0
1179356_1	-2.436	0.185	1	1	8	255	164	194	152	875	214	331	182	0
1180144_1	-0.144	0.905	1	1	9	567	309	203	165	990	339	327	229	0
1180932_1	-1.073	0.475	1	1	10	322	158	198	196	719	354	289	162	0
1181708_1	-0.754	0.593	1	1	11	383	222	188	146	836	214	294	261	0
1182496_1	-0.869	0.548	1	1	12	293	165	188	155	636	180	320	119	0
1183572_1	0.163	1.120	1	1	13	666	286	185	155	1028	294	320	120	0
1184348_1	-0.798	0.575	1	1	14	334	209	179	150	777	212	333	124	0
1185136_1	-0.108	0.928	1	1	15	281	187	187	142	485	299	318	127	-50
1185924_1	-0.808	0.571	1	1	16	322	166	191	143	696	213	318	218	0
1186700_1	-0.124	0.917	1	1	17	484	224	199	163	823	227	311	160	0
1187488_1	-0.884	0.542	1	1	18	319	152	199	163	668	200	303	143	0
1188564_1	3.595	12.086	1	1	19	213	171	191	181	325	134	322	128	-50
1189340_1	0.296	1.228	1	1	20	699	324	191	171	1007	283	325	128	0

Total number of rows: 21794

Table truncated, full table size 1389 Kbytes.

Supplementary data files not provided

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