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Status
Public on Oct 27, 2004
Title
NCI/ATC Hs-OperonV2
Technology type
spotted oligonucleotide
Distribution
non-commercial
Organism
Homo sapiens Manufacturer
Printing by the NCI /ATC Microarray Facility
Manufacture protocol
The human long oligonuleotide probe set contains 21,329 optimized 70mers (plus controls) obtained from Operon (http://www.operon.com/ ) . The long oligonucleotide probes were purchased in 384-well polypropylene plates (Genetix, 384 micro array) and dissolved in 3XSSC print buffer at a concentration of 20-30 uM. The microarray spot densities are 160 microns (center-to-center), and one spot is printed per probe per slide. The microarrays printed on Corning Ultra-GAPS slides (Item #40018) coated with amino-silane and post-processed according to the manufacturer's protocol.
Support
glass
Coating
amino-silane coated glass Corning Ultra-GAPS (http://www.corning.com )
Description
Attachment: UV cross-linkedhttp://www.genomicsolutions.com ) that is fitted with a printhead containing 32 SMP3 printing pins from Telechem International (http://www.arrayit.com ).
Citation(s)
16532004 Submission date
Oct 22, 2004
Last update date
Jan 17, 2013
Contact name
David Petersen
E-mail(s)
petersed@mail.nih.gov Phone
301-435-7898
Organization name
NCI
Lab
NCI Microarray Facility
Street address
8717 Grovemont Circle
City
Gaithersburg
State/province
MD
ZIP/Postal code
20892-4605
Country
USA
Samples (1045)
GSM33748 , GSM33749 , GSM33750 , GSM33751 , GSM33752 , GSM33753
GSM33754 ,
GSM33755 ,
GSM33756 ,
GSM33757 ,
GSM33758 ,
GSM33759 ,
GSM33760 ,
GSM33761 ,
GSM33762 ,
GSM33763 ,
GSM33764 ,
GSM33765 ,
GSM33766 ,
GSM33767 ,
GSM33768 ,
GSM33769 ,
GSM33770 ,
GSM33771 ,
GSM33772 ,
GSM33773 ,
GSM33774 ,
GSM33775 ,
GSM33776 ,
GSM33777 ,
GSM33778 ,
GSM33779 ,
GSM33780 ,
GSM33781 ,
GSM33782 ,
GSM33783 ,
GSM33784 ,
GSM33785 ,
GSM33786 ,
GSM33787 ,
GSM33788 ,
GSM33789 ,
GSM33790 ,
GSM33791 ,
GSM33792 ,
GSM33793 ,
GSM33794 ,
GSM33795 ,
GSM33796 ,
GSM33797 ,
GSM33798 ,
GSM33799 ,
GSM33800 ,
GSM33801 ,
GSM33802 ,
GSM33803 ,
GSM33804 ,
GSM33805 ,
GSM33806 ,
GSM33807 ,
GSM33808 ,
GSM33809 ,
GSM33810 ,
GSM33811 ,
GSM33812 ,
GSM33813 ,
GSM33814 ,
GSM33815 ,
GSM33816 ,
GSM33817 ,
GSM33818 ,
GSM33819 ,
GSM33820 ,
GSM33821 ,
GSM33822 ,
GSM33823 ,
GSM33824 ,
GSM33825 ,
GSM33826 ,
GSM33827 ,
GSM33828 ,
GSM33829 ,
GSM33830 ,
GSM33831 ,
GSM33832 ,
GSM33833 ,
GSM33834 ,
GSM33835 ,
GSM33836 ,
GSM33837 ,
GSM33838 ,
GSM33839 ,
GSM33840 ,
GSM33841 ,
GSM33842 ,
GSM33843 ,
GSM33844 ,
GSM33845 ,
GSM33846 ,
GSM33847 ,
GSM33848 ,
GSM33849 ,
GSM33850 ,
GSM33851 ,
GSM33852 ,
GSM33853 ,
GSM33854 ,
GSM33855 ,
GSM33856 ,
GSM33857 ,
GSM33858 ,
GSM33859 ,
GSM33860 ,
GSM33861 ,
GSM33862 ,
GSM33863 ,
GSM33864 ,
GSM33865 ,
GSM33866 ,
GSM33867 ,
GSM33868 ,
GSM33869 ,
GSM33870 ,
GSM33871 ,
GSM33872 ,
GSM33873 ,
GSM33874 ,
GSM33875 ,
GSM33876 ,
GSM33877 ,
GSM33878 ,
GSM33879 ,
GSM33880 ,
GSM33881 ,
GSM33882 ,
GSM33883 ,
GSM33884 ,
GSM33885 ,
GSM33886 ,
GSM33887 ,
GSM33888 ,
GSM33889 ,
GSM33890 ,
GSM33891 ,
GSM33892 ,
GSM33893 ,
GSM33894 ,
GSM33895 ,
GSM33896 ,
GSM33897 ,
GSM33898 ,
GSM33899 ,
GSM33900 ,
GSM33901 ,
GSM33902 ,
GSM33903 ,
GSM33904 ,
GSM33905 ,
GSM33906 ,
GSM33907 ,
GSM33908 ,
GSM33909 ,
GSM33910 ,
GSM33911 ,
GSM33912 ,
GSM33913 ,
GSM33914 ,
GSM33915 ,
GSM33916 ,
GSM33917 ,
GSM33918 ,
GSM33919 ,
GSM33920 ,
GSM33921 ,
GSM33922 ,
GSM33923 ,
GSM33924 ,
GSM33925 ,
GSM33926 ,
GSM33927 ,
GSM33928 ,
GSM33929 ,
GSM36482 ,
GSM36483 ,
GSM36484 ,
GSM36485 ,
GSM36486 ,
GSM36487 ,
GSM36488 ,
GSM36489 ,
GSM36490 ,
GSM36491 ,
GSM41859 ,
GSM41860 ,
GSM41861 ,
GSM41862 ,
GSM41863 ,
GSM41864 ,
GSM41865 ,
GSM41866 ,
GSM41867 ,
GSM41868 ,
GSM41869 ,
GSM41870 ,
GSM41871 ,
GSM41872 ,
GSM41873 ,
GSM41874 ,
GSM41875 ,
GSM41876 ,
GSM41877 ,
GSM41878 ,
GSM41879 ,
GSM41880 ,
GSM41881 ,
GSM41882 ,
GSM41883 ,
GSM41884 ,
GSM41885 ,
GSM41886 ,
GSM41887 ,
GSM41888 ,
GSM41889 ,
GSM41890 ,
GSM41891 ,
GSM41892 ,
GSM41893 ,
GSM41894 ,
GSM41895 ,
GSM41896 ,
GSM41897 ,
GSM41898 ,
GSM41899 ,
GSM41900 ,
GSM41901 ,
GSM41902 ,
GSM41903 ,
GSM41904 ,
GSM41905 ,
GSM41906 ,
GSM41907 ,
GSM41908 ,
GSM41909 ,
GSM41910 ,
GSM41911 ,
GSM41912 ,
GSM41913 ,
GSM41914 ,
GSM41915 ,
GSM41916 ,
GSM41917 ,
GSM41918 ,
GSM41919 ,
GSM41920 ,
GSM41921 ,
GSM41922 ,
GSM41923 ,
GSM41924 ,
GSM41925 ,
GSM41926 ,
GSM41927 ,
GSM41928 ,
GSM41929 ,
GSM41930 ,
GSM41931 ,
GSM41932 ,
GSM41933 ,
GSM41934 ,
GSM41935 ,
GSM41936 ,
GSM41937 ,
GSM41938 ,
GSM41939 ,
GSM41940 ,
GSM41941 ,
GSM41942 ,
GSM41943 ,
GSM41944 ,
GSM41945 ,
GSM71395 ,
GSM71396 ,
GSM71397 ,
GSM71398 ,
GSM71399 ,
GSM71400 ,
GSM71401 ,
GSM71402 ,
GSM71403 ,
GSM71404 ,
GSM71405 ,
GSM71406 ,
GSM71407 ,
GSM71408 ,
GSM71409 ,
GSM71410 ,
GSM71411 ,
GSM71412 ,
GSM71413 ,
GSM71414 ,
GSM71415 ,
GSM71416 ,
GSM71417 ,
GSM71418 ,
GSM71419 ,
GSM71420 ,
GSM71421 ,
GSM71422 ,
GSM71423 ,
GSM71424 ,
GSM71425 ,
GSM71426 ,
GSM71427 ,
GSM71428 ,
GSM71429 ,
GSM71430 ,
GSM71431 ,
GSM71432 ,
GSM71433 ,
GSM71434 ,
GSM71435 ,
GSM71436 ,
GSM71437 ,
GSM71438 ,
GSM71439 ,
GSM71440 ,
GSM71441 ,
GSM71442 ,
GSM71443 ,
GSM71444 ,
GSM71445 ,
GSM71446 ,
GSM71447 ,
GSM71448 ,
GSM71449 ,
GSM71450 ,
GSM71451 ,
GSM71452 ,
GSM71453 ,
GSM71454 ,
GSM71455 ,
GSM71456 ,
GSM71457 ,
GSM71458 ,
GSM71459 ,
GSM71460 ,
GSM71461 ,
GSM71462 ,
GSM71463 ,
GSM71464 ,
GSM71465 ,
GSM71466 ,
GSM71467 ,
GSM71468 ,
GSM71469 ,
GSM71470 ,
GSM71471 ,
GSM71472 ,
GSM71473 ,
GSM92049 ,
GSM92050 ,
GSM92051 ,
GSM92052 ,
GSM92053 ,
GSM92054 ,
GSM92055 ,
GSM92056 ,
GSM92057 ,
GSM92058 ,
GSM92059 ,
GSM92060 ,
GSM92061 ,
GSM92062 ,
GSM92063 ,
GSM92064 ,
GSM92065 ,
GSM92066 ,
GSM92067 ,
GSM92068 ,
GSM92069 ,
GSM92070 ,
GSM92071 ,
GSM92072 ,
GSM92073 ,
GSM92074 ,
GSM92075 ,
GSM92076 ,
GSM92077 ,
GSM92078 ,
GSM92079 ,
GSM92080 ,
GSM92081 ,
GSM92082 ,
GSM92083 ,
GSM92084 ,
GSM92085 ,
GSM92086 ,
GSM92087 ,
GSM92088 ,
GSM92089 ,
GSM92090 ,
GSM92091 ,
GSM92092 ,
GSM92093 ,
GSM92094 ,
GSM92095 ,
GSM92096 ,
GSM92097 ,
GSM92098 ,
GSM92099 ,
GSM92100 ,
GSM92101 ,
GSM92102 ,
GSM92103 ,
GSM92104 ,
GSM92105 ,
GSM92106 ,
GSM92107 ,
GSM92108 ,
GSM92109 ,
GSM92110 ,
GSM92111 ,
GSM92112 ,
GSM92113 ,
GSM92114 ,
GSM92115 ,
GSM92116 ,
GSM92117 ,
GSM92118 ,
GSM92119 ,
GSM92120 ,
GSM92121 ,
GSM92122 ,
GSM92123 ,
GSM92124 ,
GSM92125 ,
GSM92126 ,
GSM92127 ,
GSM92128 ,
GSM92129 ,
GSM92130 ,
GSM92131 ,
GSM92132 ,
GSM92133 ,
GSM92134 ,
GSM92135 ,
GSM92136 ,
GSM92137 ,
GSM92138 ,
GSM92139 ,
GSM92140 ,
GSM92141 ,
GSM92142 ,
GSM92143 ,
GSM92144 ,
GSM92145 ,
GSM92146 ,
GSM112408 ,
GSM112409 ,
GSM112412 ,
GSM112413 ,
GSM112416 ,
GSM112417 ,
GSM112420 ,
GSM112421 ,
GSM112424 ,
GSM112425 ,
GSM112428 ,
GSM112429 ,
GSM112430 ,
GSM112431 ,
GSM112434 ,
GSM112435 ,
GSM112436 ,
GSM112439 ,
GSM112440 ,
GSM112443 ,
GSM112444 ,
GSM112450 ,
GSM112451 ,
GSM112452 ,
GSM112453 ,
GSM112454 ,
GSM112456 ,
GSM112458 ,
GSM112459 ,
GSM112462 ,
GSM128425 ,
GSM138758 ,
GSM138759 ,
GSM138760 ,
GSM138761 ,
GSM138762 ,
GSM138763 ,
GSM138764 ,
GSM138765 ,
GSM138766 ,
GSM138767 ,
GSM138768 ,
GSM138769 ,
GSM138770 ...
Accession list truncated, click here to browse through all related public accessions You can also download a list of all accessions here Series (16)
GSE1898 Human Hepatocellular Carcinoma study
GSE2020 Differential Gene Up-regulation by HIF-1a and HIF-2a in HEK293T.
GSE2296 Effects of inducible HIV-1 Vpr protein on cellular gene expression
GSE3176 p53 In Inflamatory Stress Response
GSE4024 HCC Gene Expression Profile
GSE4982 Dye Bias Array Set
GSE5515 Effects of DKK1 on gene expression on melanocytes
GSE5975 Gene Expression Profiling of Hepatocellular Carcinoma
GSE6592 Gene Expression of Human Lymphocytes Used For ACT of Metastatic Melanoma
GSE8916 Gene expression changes with inducible expression of activated ras and ras effector domain mutants
GSE9211 Effects of DKK1 on gene expression on keratinocytes
GSE12443 The Central Role of c-Myc during Malignant Conversion in Human Hepatocarcinogenesis
GSE13476 Tamoxifen induces expression of immune-response related genes in cultured NHMEC
GSE15919 Expression profiling of MRC5 senescent fibroblasts
GSE20970 Gene Expression Profiling Reveals a Massive, Aneuploidy-Dependent Transcriptional Deregulation and Distinct Differences between Lymph Node–Negative and Lymph Node–Positive Colon Carcinomas
GSE47106 Crosstalk between renal tumor suppressors: FLCN contributes to VHL tumor suppressing activity in renal cancer
Data table header descriptions ID NIH mAdb well id plus replicate number
MADB_WELL_ID NIH mAdb plate-well identifier for oligo sample
OLIGO_ID Oligo identifier
GENE Gene Name
UNIGENE UniGene Identifier Build #Hs.194
DESCRIPTION Gene Description
GB_LIST Representative GENBANK ID
SPOT_ID spot identifier for features without GB_LIST
Data table ID MADB_WELL_ID OLIGO_ID GENE UNIGENE DESCRIPTION GB_LIST SPOT_ID 1173588_1
1173588
H200000098
PTS
503860
6-pyruvoyltetrahydropterin synthase (PTS), mRNA.
NM_000317 1173592_1
1173592
H200000102
FLT3
507590
fms-related tyrosine kinase 3 (FLT3), mRNA.
NM_004119 1173596_1
1173596
H200000106
ADM
441047
adrenomedullin (ADM), mRNA.
NM_001124 1173612_1
1173612
H200000122
FUT7
457
fucosyltransferase 7 (alpha (1,3) fucosyltransferase) (FUT7), mRNA.
NM_004479 1173616_1
1173616
H200000126
SDHA
440475
succinate dehydrogenase complex, subunit A, flavoprotein (Fp) (SDHA), nuclear gene encoding mitochondrial protein, mRNA.
NM_004168 1173620_1
1173620
H200000130
ISL1
505
ISL1 transcription factor, LIM/homeodomain, (islet-1) (ISL1), mRNA.
NM_002202 1173636_1
1173636
H200000146
ALDH3A1
531682
aldehyde dehydrogenase 3 family, memberA1 (ALDH3A1), mRNA.
NM_000691 1173640_1
1173640
H200000150
GOT1
500756
glutamic-oxaloacetic transaminase 1, soluble (aspartate aminotransferase 1) (GOT1), mRNA.
NM_002079 1173644_1
1173644
H200000154
LGALS3
531081
lectin, galactoside-binding, soluble, 3 (galectin 3) (LGALS3), mRNA.
NM_002306 1173660_1
1173660
H200000170
CSTF2
132370
cleavage stimulation factor, 3' pre-RNA, subunit 2, 64kDa (CSTF2), mRNA.
NM_001325 1173664_1
1173664
H200000174
CYP2C18
511872
cytochrome P450, family 2, subfamily C, polypeptide 18 (CYP2C18), mRNA.
NM_000772 1173668_1
1173668
H200000178
THRA
724
thyroid hormone receptor, alpha (erythroblastic leukemia viral (v-erb-a) oncogene homolog, avian) (THRA), transcript variant 2, mRNA.
NM_003250 1173972_1
1173972
H200000478
PGC
1867
progastricsin (pepsinogen C) (PGC), mRNA.
NM_002630 1173976_1
1173976
H200000482
PRKCH
333907
protein kinase C, eta (PRKCH), mRNA.
NM_024064 1173980_1
1173980
H200000486
KLKB1
237642
kallikrein B, plasma (Fletcher factor) 1 (KLKB1), mRNA.
NM_000892 1173996_1
1173996
H200000502
SEMG1
1968
semenogelin I (SEMG1), transcript variant 2, mRNA.
NM_003007 1174000_1
1174000
H200000506
PDGFB
1976
platelet-derived growth factor beta polypeptide (simian sarcoma viral (v-sis) oncogene homolog) (PDGFB), transcript variant 2, mRNA.
NM_002608 1174004_1
1174004
H200000510
SRY
1992
sex determining region Y (SRY), mRNA.
NM_003140 1174020_1
1174020
H200000526
TYR
503555
tyrosinase (oculocutaneous albinism IA) (TYR), mRNA.
NM_000372 1174024_1
1174024
H200000530
ZFX
336681
zinc finger protein, X-linked (ZFX), mRNA.
X59739 , NM_003410
22242 2315 Kbytes .Supplementary data files not provided
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