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Sample GSM33823

Query DataSets for GSM33823

Status

Public on Oct 28, 2004

Title

HCC038_Cy5

Sample type

RNA

Channel 1

Source name

HCC038

Organism

Extracted molecule

total RNA

Channel 2

Source name

Pooled Normal Liver

Organism

Extracted molecule

total RNA

Description

mAdb experiment ID: 45225

Array Print: Hs-OperonV2-vB1.1p12-060403
Tissue_type: Hepatocellular Carcinoma
Sample: HCC038
Sample_Description: subgroup A

Submission date

Oct 27, 2004

Last update date

May 27, 2005

Contact name

Snorri S Thorgeirsson

E-mail(s)

snorri_s_thorgeirsson@nih.gov

Phone

(301) 496-5688 x204

Fax

(301) 496-0734

URL

http://neoplasia.nci.nih.gov/

Organization name

National Cancer institute/NIH

Department

Laboratory of Experimental Carcinogenesis

Lab

Cellular and Molecular Biology Section

Street address

37 Convent Dr. # 4146

City

Bethesda

State/province

MD

ZIP/Postal code

20892

Country

USA

Platform ID

Series (1)

Human Hepatocellular Carcinoma study

Data table header descriptions
ID_REF	NCI mAdb well id plus replicate number
VALUE	log ratio (log2 of PRE_VALUE)
PRE_VALUE	Calibrated Ratio (Sample_target_source1 / Sample_target_source2 )
Slide_block	Array block location
Slide_column	Array column location
Slide_row	Array row location
CH1_MEAN	Sample 1 (Red Channel) mean Intensity
CH1_SD	Sample 1 (Red Channel) Standard Deviation
CH1_BKD_median	Sample 1 (Red Channel) median Background Level
CH1_BKD_SD	Sample 1 (Red Channel) Background Standard Deviation
CH2_MEAN	Sample 2 (Green Channel) mean Intensity
CH2_SD	Sample 2 (Green Channel) Standard Deviation
CH2_BKD_median	Sample 2 (Green Channel) median Background Level
CH2_BKD_SD	Sample 2 (Green Channel) Background Standard Deviation
Flag	Quality flag 0->good, -50->Not found, -100->Bad

Data table
ID_REF	VALUE	PRE_VALUE	Slide_block	Slide_column	Slide_row	CH1_MEAN	CH1_SD	CH1_BKD_median	CH1_BKD_SD	CH2_MEAN	CH2_SD	CH2_BKD_median	CH2_BKD_SD	Flag
1173588_1	-0.330	0.796	1	1	1	1178	411	476	220	1164	359	208	125	0
1174364_1	0.129	1.094	1	1	2	3671	983	494	242	3367	773	219	198	0
1175152_1	-0.226	0.855	1	1	3	762	254	478	250	584	173	224	189	0
1175940_1	0.981	1.974	1	1	4	1311	414	502	217	671	173	227	112	0
1176716_1	-0.180	0.883	1	1	5	1675	525	501	222	1692	491	251	105	0
1177504_1	0.587	1.502	1	1	6	1376	331	486	247	873	153	231	107	0
1178580_1	-0.534	0.691	1	1	7	8908	2508	468	234	13462	3739	220	100	0
1179356_1	-0.239	0.847	1	1	8	812	287	450	204	679	152	216	76	0
1180144_1	0.677	1.599	1	1	9	1184	441	470	201	692	165	208	78	0
1180932_1	-0.233	0.851	1	1	10	719	204	456	221	548	235	213	124	0
1181708_1	0.034	1.024	1	1	11	729	312	436	209	519	133	209	96	0
1182496_1	0.166	1.122	1	1	12	651	217	477	214	394	133	226	91	-50
1183572_1	0.646	1.565	1	1	13	1392	478	462	203	856	202	212	73	0
1184348_1	-0.162	0.894	1	1	14	694	264	449	212	514	215	217	92	0
1185136_1	-0.364	0.777	1	1	15	519	261	443	210	312	175	206	106	-50
1185924_1	-1.389	0.382	1	1	16	545	225	465	226	438	148	211	95	-50
1186700_1	-0.265	0.832	1	1	17	818	268	497	223	635	221	217	104	0
1187488_1	0.000	1.000	1	1	18	789	254	489	239	546	199	221	117	0
1188564_1	2.059	4.168	1	1	19	488	173	438	234	221	98	208	95	-50
1189340_1	0.986	1.980	1	1	20	889	375	465	227	457	190	225	68	0

Total number of rows: 21794

Table truncated, full table size 1397 Kbytes.

Supplementary data files not provided

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