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Sample GSM33886

Query DataSets for GSM33886

Status

Public on Oct 28, 2004

Title

HCC070_Cy3

Sample type

RNA

Channel 1

Source name

Pooled Normal Liver

Organism

Extracted molecule

total RNA

Channel 2

Source name

HCC070

Organism

Extracted molecule

total RNA

Description

mAdb experiment ID: 41001

Array Print: Hs-OperonV2-vB1.1p5-031303
Tissue_type: Hepatocellular Carcinoma
Sample: HCC070
Sample_Description: subgroup A

Submission date

Oct 27, 2004

Last update date

May 27, 2005

Contact name

Snorri S Thorgeirsson

E-mail(s)

snorri_s_thorgeirsson@nih.gov

Phone

(301) 496-5688 x204

Fax

(301) 496-0734

URL

http://neoplasia.nci.nih.gov/

Organization name

National Cancer institute/NIH

Department

Laboratory of Experimental Carcinogenesis

Lab

Cellular and Molecular Biology Section

Street address

37 Convent Dr. # 4146

City

Bethesda

State/province

MD

ZIP/Postal code

20892

Country

USA

Platform ID

Series (1)

Human Hepatocellular Carcinoma study

Data table header descriptions
ID_REF	NCI mAdb well id plus replicate number
VALUE	log ratio (log2 of PRE_VALUE)
PRE_VALUE	Calibrated Ratio (Sample_target_source1 / Sample_target_source2 )
Slide_block	Array block location
Slide_column	Array column location
Slide_row	Array row location
CH1_MEAN	Sample 1 (Red Channel) mean Intensity
CH1_SD	Sample 1 (Red Channel) Standard Deviation
CH1_BKD_median	Sample 1 (Red Channel) median Background Level
CH1_BKD_SD	Sample 1 (Red Channel) Background Standard Deviation
CH2_MEAN	Sample 2 (Green Channel) mean Intensity
CH2_SD	Sample 2 (Green Channel) Standard Deviation
CH2_BKD_median	Sample 2 (Green Channel) median Background Level
CH2_BKD_SD	Sample 2 (Green Channel) Background Standard Deviation
Flag	Quality flag 0->good, -50->Not found, -100->Bad

Data table
ID_REF	VALUE	PRE_VALUE	Slide_block	Slide_column	Slide_row	CH1_MEAN	CH1_SD	CH1_BKD_median	CH1_BKD_SD	CH2_MEAN	CH2_SD	CH2_BKD_median	CH2_BKD_SD	Flag
1173588_1	0.503	1.418	1	1	1	2972	614	173	131	2663	523	226	137	0
1174364_1	0.260	1.197	1	1	2	14991	4460	187	120	15487	4344	224	85	0
1175152_1	-0.025	0.983	1	1	3	1259	428	181	96	1568	454	214	88	0
1175940_1	0.171	1.125	1	1	4	2699	783	174	102	2971	802	202	71	0
1176716_1	0.216	1.162	1	1	5	4349	1093	173	105	4655	1080	218	77	0
1177504_1	0.071	1.050	1	1	6	3051	786	179	97	3605	759	230	83	0
1178580_1	0.659	1.579	1	1	7	5760	1145	159	94	4584	1095	206	96	0
1179356_1	-0.186	0.879	1	1	8	1445	426	117	87	1948	397	84	103	0
1180144_1	0.136	1.099	1	1	9	1904	574	120	85	2086	591	82	99	0
1180932_1	-0.147	0.903	1	1	10	756	345	137	84	952	259	106	109	0
1181708_1	-0.083	0.944	1	1	11	745	416	137	89	911	239	116	116	0
1182496_1	-0.849	0.555	1	1	12	322	156	170	96	539	186	201	103	-50
1183572_1	-0.360	0.779	1	1	13	1723	489	187	92	2660	525	227	77	0
1184348_1	-0.304	0.810	1	1	14	494	211	183	98	705	180	231	82	0
1185136_1	-0.011	0.992	1	1	15	351	300	150	103	452	364	202	113	-50
1185924_1	-0.051	0.965	1	1	16	711	276	148	93	890	312	170	105	0
1186700_1	0.229	1.172	1	1	17	1235	360	174	99	1339	344	222	83	0
1187488_1	-0.561	0.678	1	1	18	541	218	177	91	901	312	238	80	0
1188564_1	0.122	1.088	1	1	19	8389	1376	180	94	9624	1736	311	149	0
1189340_1	0.301	1.232	1	1	20	1426	439	180	99	1523	426	275	149	0

Total number of rows: 21794

Table truncated, full table size 1370 Kbytes.

Supplementary data files not provided

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