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Sample GSM33892

Query DataSets for GSM33892

Status

Public on Oct 28, 2004

Title

HCC073_Cy3

Sample type

RNA

Channel 1

Source name

Pooled Normal Liver

Organism

Extracted molecule

total RNA

Channel 2

Source name

HCC073

Organism

Extracted molecule

total RNA

Description

mAdb experiment ID: 41009

Array Print: Hs-OperonV2-vB1.1p5-031303
Tissue_type: Hepatocellular Carcinoma
Sample: HCC073
Sample_Description: subgroup A

Submission date

Oct 27, 2004

Last update date

May 27, 2005

Contact name

Snorri S Thorgeirsson

E-mail(s)

snorri_s_thorgeirsson@nih.gov

Phone

(301) 496-5688 x204

Fax

(301) 496-0734

URL

http://neoplasia.nci.nih.gov/

Organization name

National Cancer institute/NIH

Department

Laboratory of Experimental Carcinogenesis

Lab

Cellular and Molecular Biology Section

Street address

37 Convent Dr. # 4146

City

Bethesda

State/province

MD

ZIP/Postal code

20892

Country

USA

Platform ID

Series (1)

Human Hepatocellular Carcinoma study

Data table header descriptions
ID_REF	NCI mAdb well id plus replicate number
VALUE	log ratio (log2 of PRE_VALUE)
PRE_VALUE	Calibrated Ratio (Sample_target_source1 / Sample_target_source2 )
Slide_block	Array block location
Slide_column	Array column location
Slide_row	Array row location
CH1_MEAN	Sample 1 (Red Channel) mean Intensity
CH1_SD	Sample 1 (Red Channel) Standard Deviation
CH1_BKD_median	Sample 1 (Red Channel) median Background Level
CH1_BKD_SD	Sample 1 (Red Channel) Background Standard Deviation
CH2_MEAN	Sample 2 (Green Channel) mean Intensity
CH2_SD	Sample 2 (Green Channel) Standard Deviation
CH2_BKD_median	Sample 2 (Green Channel) median Background Level
CH2_BKD_SD	Sample 2 (Green Channel) Background Standard Deviation
Flag	Quality flag 0->good, -50->Not found, -100->Bad

Data table
ID_REF	VALUE	PRE_VALUE	Slide_block	Slide_column	Slide_row	CH1_MEAN	CH1_SD	CH1_BKD_median	CH1_BKD_SD	CH2_MEAN	CH2_SD	CH2_BKD_median	CH2_BKD_SD	Flag
1173588_1	0.859	1.814	1	1	1	1683	415	169	63	1457	268	256	58	0
1174364_1	0.913	1.883	1	1	2	4240	820	173	64	3357	699	249	53	0
1175152_1	-0.027	0.982	1	1	3	797	229	172	58	1164	262	248	59	0
1175940_1	0.225	1.169	1	1	4	1158	335	176	129	1453	308	244	58	0
1176716_1	0.410	1.328	1	1	5	2398	544	181	129	2645	512	244	50	0
1177504_1	0.864	1.820	1	1	6	1957	407	175	82	1651	264	242	61	0
1178580_1	0.376	1.298	1	1	7	3099	595	180	94	3482	706	246	63	0
1179356_1	0.051	1.036	1	1	8	691	289	187	465	955	370	255	64	0
1180144_1	0.034	1.024	1	1	9	982	375	190	422	1370	443	257	71	0
1180932_1	-0.226	0.855	1	1	10	494	205	191	87	763	149	253	66	0
1181708_1	0.055	1.039	1	1	11	598	207	185	188	826	164	254	90	0
1182496_1	-0.553	0.682	1	1	12	384	121	185	193	669	126	249	82	0
1183572_1	0.558	1.472	1	1	13	1566	2189	190	62	1595	435	250	54	0
1184348_1	-0.096	0.935	1	1	14	533	157	191	69	789	140	263	59	0
1185136_1	0.006	1.004	1	1	15	261	115	187	66	368	188	262	55	-50
1185924_1	0.177	1.130	1	1	16	526	151	185	61	686	124	252	52	0
1186700_1	1.420	2.676	1	1	17	1278	4387	188	3337	834	632	248	2900	0
1187488_1	-0.463	0.725	1	1	18	550	175	186	70	972	232	250	59	0
1188564_1	0.035	1.025	1	1	19	5201	1206	183	66	7296	1674	251	62	0
1189340_1	0.654	1.573	1	1	20	874	361	185	64	874	346	244	62	0

Total number of rows: 21794

Table truncated, full table size 1373 Kbytes.

Supplementary data files not provided

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