GEO Accession viewer

NCBI > GEO > Accession Display

Not logged in | Login

GEO help: Mouse over screen elements for information.

Sample GSM33926

Query DataSets for GSM33926

Status

Public on Oct 28, 2004

Title

HCC089-2_Cy3

Sample type

RNA

Channel 1

Source name

Pooled Normal Liver

Organism

Extracted molecule

total RNA

Channel 2

Source name

HCC089-2

Organism

Extracted molecule

total RNA

Description

mAdb experiment ID: 42748

Array Print: Hs-OperonV2-vW1.1p10-042903
Tissue_type: Hepatocellular Carcinoma
Sample: HCC089-2
Sample_Description: subgroup B

Submission date

Oct 27, 2004

Last update date

May 27, 2005

Contact name

Snorri S Thorgeirsson

E-mail(s)

snorri_s_thorgeirsson@nih.gov

Phone

(301) 496-5688 x204

Fax

(301) 496-0734

URL

http://neoplasia.nci.nih.gov/

Organization name

National Cancer institute/NIH

Department

Laboratory of Experimental Carcinogenesis

Lab

Cellular and Molecular Biology Section

Street address

37 Convent Dr. # 4146

City

Bethesda

State/province

MD

ZIP/Postal code

20892

Country

USA

Platform ID

Series (1)

Human Hepatocellular Carcinoma study

Data table header descriptions
ID_REF	NCI mAdb well id plus replicate number
VALUE	log ratio (log2 of PRE_VALUE)
PRE_VALUE	Calibrated Ratio (Sample_target_source1 / Sample_target_source2 )
Slide_block	Array block location
Slide_column	Array column location
Slide_row	Array row location
CH1_MEAN	Sample 1 (Red Channel) mean Intensity
CH1_SD	Sample 1 (Red Channel) Standard Deviation
CH1_BKD_median	Sample 1 (Red Channel) median Background Level
CH1_BKD_SD	Sample 1 (Red Channel) Background Standard Deviation
CH2_MEAN	Sample 2 (Green Channel) mean Intensity
CH2_SD	Sample 2 (Green Channel) Standard Deviation
CH2_BKD_median	Sample 2 (Green Channel) median Background Level
CH2_BKD_SD	Sample 2 (Green Channel) Background Standard Deviation
Flag	Quality flag 0->good, -50->Not found, -100->Bad

Data table
ID_REF	VALUE	PRE_VALUE	Slide_block	Slide_column	Slide_row	CH1_MEAN	CH1_SD	CH1_BKD_median	CH1_BKD_SD	CH2_MEAN	CH2_SD	CH2_BKD_median	CH2_BKD_SD	Flag
1174261_1	0.099	1.071	1	1	2	3455	851	253	177	3751	882	362	149	0
1175033_1	0.313	1.242	1	1	3	7946	2719	248	161	7377	2433	350	147	0
1175841_1	0.433	1.350	1	1	4	2567	880	234	169	2296	843	337	165	0
1176613_1	0.467	1.382	1	1	5	1447	600	229	162	1325	434	326	185	0
1177385_1	0.402	1.322	1	1	6	2893	628	228	158	2612	711	326	179	0
1179253_1	0.127	1.092	1	1	8	7914	1207	226	211	8300	1824	318	394	0
1180025_1	0.609	1.525	1	1	9	4208	1154	220	194	3275	955	311	411	0
1180833_1	0.312	1.242	1	1	10	4339	1791	228	214	4100	2013	347	497	0
1181605_1	0.807	1.749	1	1	11	3964	1351	246	327	2745	929	335	230	0
1182377_1	0.477	1.391	1	1	12	7675	1802	237	669	6396	1478	336	321	0
1184245_1	0.289	1.222	1	1	14	2970	966	216	143	2854	886	298	130	0
1185017_1	0.267	1.203	1	1	15	612	333	215	126	662	271	288	128	0
1185825_1	1.007	2.010	1	1	16	1362	641	215	132	933	314	286	129	0
1186597_1	0.386	1.307	1	1	17	6264	2017	218	134	5533	1899	287	123	0
1187369_1	0.126	1.092	1	1	18	1434	1183	217	128	1556	973	292	134	0
1189237_1	-0.213	0.863	1	1	20	2257	773	218	175	2991	950	311	192	0
1190009_1	0.108	1.078	1	1	21	1725	504	217	156	1895	581	309	199	0
1190817_1	0.675	1.597	1	1	22	1777	652	215	136	1416	452	307	123	0
1191589_1	1.069	2.098	1	1	23	1843	699	216	139	1178	542	299	124	0
1192361_1	-0.139	0.908	1	1	24	455	326	213	132	624	324	322	130	0

Total number of rows: 21794

Table truncated, full table size 1408 Kbytes.

Supplementary data files not provided

| NLM | NIH | GEO Help | Disclaimer | Accessibility |