|
Status |
Public on Apr 04, 2020 |
Title |
Mel202WT_rep2 |
Sample type |
genomic |
|
|
Source name |
Mel202 uveal melanoma cell line
|
Organism |
Homo sapiens |
Characteristics |
genotype/variation: wildtype cell type: uveal melanoma, cancer cell cell line: Mel202
|
Extracted molecule |
genomic DNA |
Extraction protocol |
Genomic DNA was isolated using QIAamp DNA Mini Kit (Qiagen) according to standard instuctions.
|
Label |
Cy5 and Cy3
|
Label protocol |
Standard Illumina Protocol
|
|
|
Hybridization protocol |
bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human MethylayionEPIC array using standard Illumina protocol
|
Scan protocol |
Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
|
Description |
uveal melanoma, cell line
|
Data processing |
ChAMP pipeline in R (2.12.4)
|
|
|
Submission date |
Apr 25, 2019 |
Last update date |
Apr 05, 2020 |
Contact name |
Matthew G. Field |
Organization name |
University of Miami
|
Street address |
1501 NW 10th Avenue
|
City |
Miami |
State/province |
FL |
ZIP/Postal code |
33136 |
Country |
USA |
|
|
Platform ID |
GPL21145 |
Series (2) |
GSE130295 |
BAP1 loss triggers DNA methylomic repatterning in highly aggressive Class 2 uveal melanomas [MethylationEPIC] |
GSE130357 |
BAP1 loss triggers DNA methylomic repatterning in highly aggressive Class 2 uveal melanomas |
|