|
Status |
Public on Apr 04, 2020 |
Title |
BAP1 loss triggers DNA methylomic repatterning in highly aggressive Class 2 uveal melanomas |
Organism |
Homo sapiens |
Experiment type |
Expression profiling by high throughput sequencing Methylation profiling by genome tiling array
|
Summary |
This SuperSeries is composed of the SubSeries listed below.
|
|
|
Overall design |
Refer to individual Series
|
|
|
Citation(s) |
31285370 |
|
Submission date |
Apr 26, 2019 |
Last update date |
Apr 10, 2020 |
Contact name |
Matthew G. Field |
Organization name |
University of Miami
|
Street address |
1501 NW 10th Avenue
|
City |
Miami |
State/province |
FL |
ZIP/Postal code |
33136 |
Country |
USA |
|
|
Platforms (3) |
GPL13534 |
Illumina HumanMethylation450 BeadChip (HumanMethylation450_15017482) |
GPL18573 |
Illumina NextSeq 500 (Homo sapiens) |
GPL21145 |
Infinium MethylationEPIC |
|
Samples (26)
|
GSM3735549 |
92.1BAP1KD_rep1 |
GSM3735550 |
Mel202WT_rep2 |
GSM3735551 |
Mel202BAP1KD_rep2 |
GSM3735552 |
92.1WT_rep2 |
GSM3735553 |
92.1BAP1KD_rep2 |
GSM3736599 |
Uveal melanoma, sample 28 |
GSM3736600 |
Uveal melanoma, sample 49 |
GSM3736601 |
Uveal melanoma, sample 50 |
GSM3736602 |
Uveal melanoma, sample 176 |
GSM3736603 |
Uveal melanoma, sample 10 |
GSM3736604 |
Uveal melanoma, sample 16 |
GSM3736605 |
Uveal melanoma, sample 90 |
GSM3736606 |
Uveal melanoma, sample 92 |
GSM3736607 |
Uveal melanoma, sample 70 |
GSM3736608 |
Uveal melanoma, sample 89 |
GSM3736609 |
Uveal melanoma, sample 93 |
GSM3736610 |
Uveal melanoma, sample 100 |
GSM3736766 |
92.1WT_rep1 |
GSM3736767 |
92.1WT_rep2 |
GSM3736768 |
Mel202WT_rep1 |
GSM3736769 |
Mel202BAP1KD_rep1 |
GSM3736770 |
92.1BAP1KD_rep1 |
GSM3736771 |
92.1BAP1KD_rep2 |
|
This SuperSeries is composed of the following SubSeries: |
GSE130295 |
BAP1 loss triggers DNA methylomic repatterning in highly aggressive Class 2 uveal melanomas [MethylationEPIC] |
GSE130354 |
BAP1 loss triggers DNA methylomic repatterning in highly aggressive Class 2 uveal melanomas [BeadChip 450K] |
GSE130356 |
BAP1 loss triggers DNA methylomic repatterning in highly aggressive Class 2 uveal melanomas [RNA-Seq] |
|
Relations |
BioProject |
PRJNA539867 |