|
| Status |
Public on Apr 04, 2020 |
| Title |
BAP1 loss triggers DNA methylomic repatterning in highly aggressive Class 2 uveal melanomas |
| Organism |
Homo sapiens |
| Experiment type |
Expression profiling by high throughput sequencing
Methylation profiling by genome tiling array
|
| Summary |
This SuperSeries is composed of the SubSeries listed below.
|
| |
|
| Overall design |
Refer to individual Series
|
| |
|
| Citation(s) |
31285370 |
| |
| Submission date |
Apr 26, 2019 |
| Last update date |
Apr 10, 2020 |
| Contact name |
Matthew G. Field |
| Organization name |
University of Miami
|
| Street address |
1501 NW 10th Avenue
|
| City |
Miami |
| State/province |
FL |
| ZIP/Postal code |
33136 |
| Country |
USA |
| |
|
| Platforms (3) |
| GPL13534 |
Illumina HumanMethylation450 BeadChip (HumanMethylation450_15017482) |
| GPL18573 |
Illumina NextSeq 500 (Homo sapiens) |
| GPL21145 |
Infinium MethylationEPIC |
|
| Samples (26)
|
| GSM3735549 |
92.1BAP1KD_rep1 |
| GSM3735550 |
Mel202WT_rep2 |
| GSM3735551 |
Mel202BAP1KD_rep2 |
| GSM3735552 |
92.1WT_rep2 |
| GSM3735553 |
92.1BAP1KD_rep2 |
| GSM3736599 |
Uveal melanoma, sample 28 |
| GSM3736600 |
Uveal melanoma, sample 49 |
| GSM3736601 |
Uveal melanoma, sample 50 |
| GSM3736602 |
Uveal melanoma, sample 176 |
| GSM3736603 |
Uveal melanoma, sample 10 |
| GSM3736604 |
Uveal melanoma, sample 16 |
| GSM3736605 |
Uveal melanoma, sample 90 |
| GSM3736606 |
Uveal melanoma, sample 92 |
| GSM3736607 |
Uveal melanoma, sample 70 |
| GSM3736608 |
Uveal melanoma, sample 89 |
| GSM3736609 |
Uveal melanoma, sample 93 |
| GSM3736610 |
Uveal melanoma, sample 100 |
| GSM3736766 |
92.1WT_rep1 |
| GSM3736767 |
92.1WT_rep2 |
| GSM3736768 |
Mel202WT_rep1 |
| GSM3736769 |
Mel202BAP1KD_rep1 |
| GSM3736770 |
92.1BAP1KD_rep1 |
| GSM3736771 |
92.1BAP1KD_rep2 |
|
| This SuperSeries is composed of the following SubSeries: |
| GSE130295 |
BAP1 loss triggers DNA methylomic repatterning in highly aggressive Class 2 uveal melanomas [MethylationEPIC] |
| GSE130354 |
BAP1 loss triggers DNA methylomic repatterning in highly aggressive Class 2 uveal melanomas [BeadChip 450K] |
| GSE130356 |
BAP1 loss triggers DNA methylomic repatterning in highly aggressive Class 2 uveal melanomas [RNA-Seq] |
|
| Relations |
| BioProject |
PRJNA539867 |
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