|
| Status |
Public on Jun 01, 2020 |
| Title |
sample543_0136_N: Patient 11 adjacent normal tissue from gastric adenocarcinoma |
| Sample type |
RNA |
| |
|
| Source name |
adjacent normal gastric tissue from gastric adenocarcinoma patients
|
| Organism |
Homo sapiens |
| Characteristics |
tissue: gastric mucosa
age: 58
Sex: Male
|
| Extracted molecule |
total RNA |
| Extraction protocol |
Total RNA extracted using Total RNA Purification Kit from Norgen Biotek corp following manufacturer's instructions
|
| Label |
Cy3
|
| Label protocol |
Labbeling was done according to Nimblegen one color DNA Labeling kit.
|
| |
|
| Hybridization protocol |
Hybridization done according to Agilent Gene expression hybridization kit
|
| Scan protocol |
Scanned on Agilent SureScan Microarray Scanner (Agilent Technologies G2600D SG12434244)
|
| Description |
sample543_0136_N
|
| Data processing |
Data pre-processing steps of background-correction, normalization and summarization were performed in R using functions in Limma library. The raw intensity for each probe is the median feature pixel intensity with the median background subtracted. Data was quantile normalized followed by log2 transform. Signals from probes measuring same ncRNA were averaged.
|
| |
|
| Submission date |
Jul 01, 2019 |
| Last update date |
Jun 02, 2020 |
| Contact name |
George Calin |
| E-mail(s) |
gcalin@mdanderson.org
|
| Phone |
713-792-5461
|
| Organization name |
MD Anderson Cancer Center
|
| Department |
Experimental Therapeutics
|
| Street address |
1881 East Road
|
| City |
Houston |
| State/province |
TX |
| ZIP/Postal code |
77054 |
| Country |
USA |
| |
|
| Platform ID |
GPL22858 |
| Series (1) |
| GSE133590 |
The lncRNA CCAT2 induces chromosomal instability through the BOP1 – Aurora Kinase B axis in cancers |
|
